Resource

Id Histone_ChIP-seq/ENCSR440PPGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR440PPG [biosample_summary="Homo sapiens BLaER1 12 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR440PPG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 12 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:51:07.214492+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR440PPG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 12 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR440PPG float

Histone_ChIP-seq_ENCSR440PPG
Histone_ChIP-seq ENCSR440PPG [biosample_summary="Homo sapiens BLaER1 12 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR440PPG [1.26, 34.2]
n
105,372,448
mean
7.76
sd
5.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1053724483.28% 64963
chr1 2863632 1.15% 2058
chr1_KI270709v1_random 1030 1.54% 3
chr1_KI270712v1_random 24212 13.75% 20
chr1_KI270713v1_random 7321 17.97% 7
chr1_KI270714v1_random 6086 14.59% 11
chr2 2204091 0.91% 1430
chr3 1233330 0.62% 896
chr4 905556 0.48% 664
chr4_GL000008v2_random 537 0.26% 1
chr5 1305580 0.72% 807
chr6 1550742 0.91% 976
chr7 1377738 0.86% 906
chr8 1271409 0.88% 873
chr9 1198948 0.87% 828
chr9_KI270717v1_random 413 1.03% 1
chr10 1430018 1.07% 1008
chr11 1509442 1.12% 982
chr12 1485962 1.11% 857
chr13 635307 0.56% 380
chr14 769769 0.72% 517
chr14_GL000009v2_random 255 0.13% 1
chr14_GL000225v1_random 270 0.13% 1
chr15 974656 0.96% 647
chr16 1081432 1.20% 702
chr17 1972366 2.37% 1306
chr17_KI270729v1_random 3470 1.24% 6
chr17_KI270730v1_random 353 0.31% 1
chr18 383934 0.48% 321
chr19 1213447 2.07% 840
chr20 870723 1.35% 599
chr21 308815 0.66% 248
chr22 756773 1.49% 508
chr22_KI270733v1_random 3844 2.14% 5
chrUn_GL000216v2 1845 1.04% 6
chrUn_GL000220v1 2179 1.35% 3
chrUn_GL000224v1 780 0.43% 2
chrUn_KI270438v1 5920 5.26% 6
chrUn_KI270442v1 2413 0.62% 7
chrUn_KI270742v1 311 0.17% 1
chrUn_KI270744v1 4863 2.89% 9
chrUn_KI270747v1 271 0.14% 1
chrX 77999456 49.99% 46510
chrY 2949 0.01% 8
3323 contigs with no values (125939290 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64963 250 62094 1622.04 697
global segment-length histogram

Files

Filename Size md5
ENCFF733DEP.bed.gz 1.26 MB e5ff4aa89c53afe74ebb03a662504beb
ENCFF733DEP.tabix.bed.gz 632.08 KB e67d7cec613966bf57f44cea24be6815
ENCFF733DEP.tabix.bed.gz.tbi 99.41 KB b99ad3671eca6efe17b784a18f8f6dd8
genomic_resource.yaml 3.12 KB 5322db7386dc9209bb3ac1ce9cc1346d
statistics/