| Id: | Histone_ChIP-seq/ENCSR439EHQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR439EHQ [biosamplesummary="Homo sapiens mesenchymal stem cell female adult and female adult (41 years) and female adult (59 years), originated from adipose tissue" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (41 years) female adult female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN180ZAE|/analyses/ENCAN180ZAE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF236VQB|/files/ENCFF236VQB/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF236VQB|/files/ENCFF236VQB/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.26. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF966QTO|/files/ENCFF966QTO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF966QTO|/files/ENCFF966QTO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.36. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR439EHQ | float |
Histone_ChIP-seq_ENCSR439EHQ |
Histone_ChIP-seq ENCSR439EHQ [biosample_summary="Homo sapiens mesenchymal stem cell female adult and female adult (41 years) and female adult (59 years), originated from adipose tissue" and target="H3K9me3"]
|
 |
[1.7, 21.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF593DYT.bed.gz | 2.65 MB | 4970b38b890a91fe9efa6368300c628a |
| ENCFF593DYT.bed.gz.dvc | 101.0 B | 804fd87286a59a723326c83179a5adc5 |
| ENCFF593DYT.tabix.bed.gz | 1.34 MB | 6c35fff9a29cf3d55ed412712ca2f1f4 |
| ENCFF593DYT.tabix.bed.gz.dvc | 107.0 B | e5c028acbcff0d299005d4f37fa04134 |
| ENCFF593DYT.tabix.bed.gz.tbi | 385.02 KB | eebd79277fc6083ba3430b5a843f8078 |
| ENCFF593DYT.tabix.bed.gz.tbi.dvc | 110.0 B | a4dfd0052f0c81e03f492cbf4b303ebe |
| genomic_resource.yaml | 4.53 KB | 5962cff7e7bd0d4a1b3f3f8b8b67d822 |
| genomic_resource_original.yaml | 4.32 KB | fc5ceadbbf693aa7c0da337bfef8b39b |
| statistics/ |