Histone_ChIP-seq_ENCSR438ZIS
Histone_ChIP-seq ENCSR438ZIS [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR438ZIS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR438ZIS [biosamplesummary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (17 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN065FIP|/analyses/ENCAN065FIP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF695ZXU|/files/ENCFF695ZXU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27101619 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF695ZXU|/files/ENCFF695ZXU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF695ZXU|/files/ENCFF695ZXU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR438ZIS | float |
Histone_ChIP-seq_ENCSR438ZIS |
Histone_ChIP-seq ENCSR438ZIS [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K27me3"]
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[1.61, 24.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF386OXO.bed.gz | 1.31 MB | c42e8724e298fc5a9c79634e053c515a |
| ENCFF386OXO.bed.gz.dvc | 101.0 B | 3632aa10720096f91aed80470f33d7a6 |
| ENCFF386OXO.tabix.bed.gz | 678.06 KB | 0cb259469fa2352e0c67fb77b9eef63a |
| ENCFF386OXO.tabix.bed.gz.dvc | 106.0 B | 22f553398945d7155122b6527710075f |
| ENCFF386OXO.tabix.bed.gz.tbi | 157.69 KB | f39356fcf56a6256ec3508858a45925b |
| ENCFF386OXO.tabix.bed.gz.tbi.dvc | 110.0 B | a614f1ba5084585219db9f2c55070989 |
| genomic_resource.yaml | 3.34 KB | 684df0772dd695696c099efef867dfc9 |
| genomic_resource_original.yaml | 3.18 KB | 6b78699cd847478d087d99a21045d176 |
| statistics/ |