Histone_ChIP-seq_ENCSR438NCW
Histone_ChIP-seq ENCSR438NCW [biosample_summary="Homo sapiens endocrine pancreas tissue male adult (46 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR438NCW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR438NCW [biosamplesummary="Homo sapiens endocrine pancreas tissue male adult (46 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN029EYB|/analyses/ENCAN029EYB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF632WWV|/files/ENCFF632WWV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 5149350 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF632WWV|/files/ENCFF632WWV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF632WWV|/files/ENCFF632WWV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR438NCW | float |
Histone_ChIP-seq_ENCSR438NCW |
Histone_ChIP-seq ENCSR438NCW [biosample_summary="Homo sapiens endocrine pancreas tissue male adult (46 years)" and target="H3K4me3"]
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[2.18, 86.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF895VWP.bed.gz | 951.0 KB | 038ad0661ef10c43e7f54323e3f3b5a9 |
| ENCFF895VWP.bed.gz.dvc | 100.0 B | c1901d27432206b824f05af74e1c6a0f |
| ENCFF895VWP.tabix.bed.gz | 438.09 KB | fb0c93017598275ca086334125080476 |
| ENCFF895VWP.tabix.bed.gz.dvc | 106.0 B | bcc4a7ae312b6938af60c72c0319f101 |
| ENCFF895VWP.tabix.bed.gz.tbi | 207.18 KB | a3b906ee7f3838943975f8e408c8baf6 |
| ENCFF895VWP.tabix.bed.gz.tbi.dvc | 110.0 B | c3b5efb3e73250b2248babd00d06c25e |
| genomic_resource.yaml | 3.3 KB | 83ccd1e2924975b852f38a0a5ad9e50c |
| genomic_resource_original.yaml | 3.16 KB | 246b2b1b7a999b83faa4921b35621b8a |
| statistics/ |