Resource

Id Histone_ChIP-seq/ENCSR434AFFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR434AFF [biosample_summary="Homo sapiens neutrophil male" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR434AFF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000775/
  • biosample_summary: Homo sapiens neutrophil male
  • date_created: 2015-09-15T19:48:47.508576+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR434AFF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male
  • status: released
  • submitter_comment: As of October 4th, 2017, new processed files have been released due to new control bams. The old files are revoked, but still accessible to the public. The DCC suggests to use the most recently released files for accurate comparison between this experiment and its control.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR434AFF float

Histone_ChIP-seq_ENCSR434AFF
Histone_ChIP-seq ENCSR434AFF [biosample_summary="Homo sapiens neutrophil male" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR434AFF [1.91, 109]
n
42,954,999
mean
36.5
sd
23.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 429549991.34% 28553
chr1 4400117 1.77% 2865
chr2 3023893 1.25% 2080
chr3 2349659 1.18% 1622
chr4 1454275 0.76% 967
chr5 1875592 1.03% 1239
chr6 2385889 1.40% 1556
chr7 1962033 1.23% 1343
chr8 1523303 1.05% 1045
chr9 1739956 1.26% 1224
chr10 1850275 1.38% 1261
chr11 2258006 1.67% 1395
chr12 2250506 1.69% 1442
chr13 785442 0.69% 539
chr14 1380265 1.29% 922
chr15 1482846 1.45% 987
chr16 1835688 2.03% 1195
chr17 2613352 3.14% 1664
chr18 626120 0.78% 445
chr19 2967494 5.06% 1888
chr20 1263042 1.96% 863
chr21 503506 1.08% 346
chr22 1070646 2.11% 713
chrX 1324524 0.85% 931
chrY 28570 0.05% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28553 215 18299 1504.4 1166
global segment-length histogram

Files

Filename Size md5
ENCFF649KVT.bed.gz 744.22 KB a7c033f38cf5f9019438f7c951595c1c
ENCFF649KVT.tabix.bed.gz 325.68 KB 8917c395fc59f08f2d180123847af602
ENCFF649KVT.tabix.bed.gz.tbi 151.76 KB 31966ef738f14a8873fdb164e021ccfb
genomic_resource.yaml 3.68 KB 215912434e8b846fc52685512feb524b
statistics/