Resource
| Id | Histone_ChIP-seq/ENCSR433PYM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR433PYM [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (90 or above years) with Alzheimer's disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN661IAQ|/analyses/ENCAN661IAQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF453NRL|/files/ENCFF453NRL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 43332179 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR433PYM | float |
Histone_ChIP-seq_ENCSR433PYM |
Histone_ChIP-seq ENCSR433PYM [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
|
 |
[1.48, 11.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 129567278 | 4.03% | 96776 |
| chr1 | 4995874 | 2.01% | 4145 |
| chr2 | 4385808 | 1.81% | 3859 |
| chr3 | 1614093 | 0.81% | 1485 |
| chr4 | 2157555 | 1.13% | 1791 |
| chr5 | 3016822 | 1.66% | 2455 |
| chr6 | 3649086 | 2.14% | 2703 |
| chr7 | 2898463 | 1.82% | 2341 |
| chr8 | 2617467 | 1.80% | 2340 |
| chr9 | 1849126 | 1.34% | 1583 |
| chr10 | 4017326 | 3.00% | 3538 |
| chr11 | 2382008 | 1.76% | 2116 |
| chr12 | 2769166 | 2.08% | 2169 |
| chr13 | 1441038 | 1.26% | 1251 |
| chr14 | 3322760 | 3.10% | 2514 |
| chr15 | 3063793 | 3.00% | 2772 |
| chr16 | 3370816 | 3.73% | 2865 |
| chr17 | 3467690 | 4.17% | 2620 |
| chr18 | 1374716 | 1.71% | 1330 |
| chr19 | 2796962 | 4.77% | 2209 |
| chr20 | 2784726 | 4.32% | 2424 |
| chr21 | 1350072 | 2.89% | 1185 |
| chr22 | 1457526 | 2.87% | 1423 |
| chrX | 68784091 | 44.08% | 45657 |
| chrY | 294 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96776 | 233 | 90495 | 1338.84 | 887 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF510BFC.bed.gz | 1.89 MB | 967a6142d773d99e903003a3bcd2cee8 |
| ENCFF510BFC.tabix.bed.gz | 964.97 KB | 80dd564b8a16bd0942380c9f119d2018 |
| ENCFF510BFC.tabix.bed.gz.tbi | 176.13 KB | c17b666a1a06020b886bdcd672f08520 |
| genomic_resource.yaml | 2.24 KB | 930cabeb84a90f562e82bad99cc6cbbe |
| statistics/ |