Resource
| Id | Histone_ChIP-seq/ENCSR431UUY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR431UUY [biosample_summary="Homo sapiens IMR-90" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN965OSV|/analyses/ENCAN965OSV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN965OSV|/analyses/ENCAN965OSV/} has in progress subobject document {307eb11f-90be-4294-9a77-b570d5755e2a|/documents/307eb11f-90be-4294-9a77-b570d5755e2a/} audit_not_compliant: Processed alignments file {ENCFF547BFL|/files/ENCFF547BFL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19316653 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF084CZB|/files/ENCFF084CZB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 24527220 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR431UUY | float |
Histone_ChIP-seq_ENCSR431UUY |
Histone_ChIP-seq ENCSR431UUY [biosample_summary="Homo sapiens IMR-90" and target="H3K27me3"]
|
 |
[1.74, 20.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 73298621 | 2.28% | 182949 |
| chr1 | 7008476 | 2.82% | 16081 |
| chr2 | 5951110 | 2.46% | 14913 |
| chr3 | 4291513 | 2.16% | 11465 |
| chr4 | 2632049 | 1.38% | 6931 |
| chr5 | 3426914 | 1.89% | 9045 |
| chr6 | 3586118 | 2.10% | 9324 |
| chr7 | 2810794 | 1.76% | 6856 |
| chr8 | 2961207 | 2.04% | 7983 |
| chr9 | 3458909 | 2.50% | 8146 |
| chr10 | 4079363 | 3.05% | 10349 |
| chr11 | 4894125 | 3.62% | 11927 |
| chr12 | 2902009 | 2.18% | 7254 |
| chr13 | 1794544 | 1.57% | 4901 |
| chr14 | 2213201 | 2.07% | 5501 |
| chr15 | 3422070 | 3.36% | 8011 |
| chr16 | 2369012 | 2.62% | 5515 |
| chr17 | 4280490 | 5.14% | 9127 |
| chr18 | 1421241 | 1.77% | 4063 |
| chr19 | 1882884 | 3.21% | 4280 |
| chr20 | 2672077 | 4.15% | 6361 |
| chr21 | 1011778 | 2.17% | 2508 |
| chr22 | 1998670 | 3.93% | 4528 |
| chrX | 2230067 | 1.43% | 7880 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 182949 | 143 | 17355 | 400.65 | 275 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF336IXL.bed.gz | 3.54 MB | b5091fa77a952d4ee35759a869c07ac0 |
| ENCFF336IXL.tabix.bed.gz | 1.73 MB | ce8a8a0a386c6be6bf2e2947f54ba02e |
| ENCFF336IXL.tabix.bed.gz.tbi | 235.62 KB | 206d3082d886c89fdd88acca1fa4fc3a |
| genomic_resource.yaml | 2.61 KB | 76b404efaa24fd6a35dc2435fee5804a |
| statistics/ |