Resource

Id Histone_ChIP-seq/ENCSR429XBUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR429XBU [biosample_summary="Homo sapiens body of pancreas tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR429XBU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue female adult (53 years)
  • date_created: 2016-10-19T23:18:38.821736+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR429XBU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR429XBU float

Histone_ChIP-seq_ENCSR429XBU
Histone_ChIP-seq ENCSR429XBU [biosample_summary="Homo sapiens body of pancreas tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR429XBU [1.21, 12.1]
n
40,283,094
mean
4.11
sd
1.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 402830941.25% 41822
chr1 4571613 1.84% 4608
chr2 2938996 1.21% 3150
chr3 2306727 1.16% 2485
chr4 1382566 0.73% 1623
chr5 1821140 1.00% 1949
chr6 1942593 1.14% 2193
chr7 1937113 1.22% 2137
chr8 1743372 1.20% 1919
chr9 2045714 1.48% 2028
chr10 1975990 1.48% 2083
chr11 2411502 1.79% 2359
chr12 1733897 1.30% 1876
chr13 842463 0.74% 922
chr14 1561520 1.46% 1511
chr15 1474789 1.45% 1445
chr16 1756353 1.94% 1707
chr17 2421019 2.91% 2309
chr18 681057 0.85% 740
chr19 1750854 2.99% 1766
chr20 1172342 1.82% 1175
chr21 349426 0.75% 394
chr22 1234507 2.43% 1142
chrM 4595 27.73% 3
chrUn_GL000195v1 1959 1.07% 4
chrUn_GL000219v1 401 0.22% 1
chrX 220586 0.14% 293
3340 contigs with no values (185925837 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41822 250 11704 963.2 775
global segment-length histogram

Files

Filename Size md5
ENCFF311DMK.bed.gz 838.35 KB 060cf797721b92856ecdb8261899f17c
ENCFF311DMK.tabix.bed.gz 429.47 KB 85be7666855193acea4272d75672b8ff
ENCFF311DMK.tabix.bed.gz.tbi 178.44 KB 5633fa22b34a13dcaf94137d09bef974
genomic_resource.yaml 2.0 KB 2240c82c7f387c62b288db15e45a4cc5
statistics/