Histone_ChIP-seq_ENCSR428WBJ
Histone_ChIP-seq ENCSR428WBJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR428WBJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR428WBJ [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN132FRU|/analyses/ENCAN132FRU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF255BHA|/files/ENCFF255BHA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF255BHA|/files/ENCFF255BHA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR428WBJ | float |
Histone_ChIP-seq_ENCSR428WBJ |
Histone_ChIP-seq ENCSR428WBJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K9me3"]
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[1.35, 18] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF994CJC.bed.gz | 1.58 MB | 06bd21e55af73bf78b3eed07094a16b2 |
| ENCFF994CJC.bed.gz.dvc | 101.0 B | 4f99ffc53d7e8644da154aa52b0b29a4 |
| ENCFF994CJC.tabix.bed.gz | 787.58 KB | 6ad77dd800b643891ee15cfac0e0fbda |
| ENCFF994CJC.tabix.bed.gz.dvc | 106.0 B | df5a1f1e3490e8adf03010d90e1de5ab |
| ENCFF994CJC.tabix.bed.gz.tbi | 339.19 KB | 73fa4db2552910def5497bf1e0ef82aa |
| ENCFF994CJC.tabix.bed.gz.tbi.dvc | 110.0 B | 50ebef85abf19044a10bd3eb68472da6 |
| genomic_resource.yaml | 2.79 KB | fae66bbfc0828abd08bdfbc8dc662170 |
| genomic_resource_original.yaml | 2.65 KB | c07e031c44823993001d65a6c4ec8388 |
| statistics/ |