Resource
| Id | Histone_ChIP-seq/ENCSR428WBJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR428WBJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN132FRU|/analyses/ENCAN132FRU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF255BHA|/files/ENCFF255BHA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF255BHA|/files/ENCFF255BHA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.60. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR428WBJ | float |
Histone_ChIP-seq_ENCSR428WBJ |
Histone_ChIP-seq ENCSR428WBJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K9me3"]
|
 |
[1.35, 18] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 78878059 | 2.45% | 76705 |
| chr1 | 5535125 | 2.22% | 5578 |
| chr2 | 6533721 | 2.70% | 6731 |
| chr3 | 5402673 | 2.72% | 5538 |
| chr4 | 5681930 | 2.99% | 5957 |
| chr5 | 5856260 | 3.23% | 5665 |
| chr6 | 4700005 | 2.75% | 4932 |
| chr7 | 4620722 | 2.90% | 4571 |
| chr8 | 4463086 | 3.08% | 4350 |
| chr9 | 3123460 | 2.26% | 3071 |
| chr10 | 3524797 | 2.63% | 3469 |
| chr11 | 3747758 | 2.77% | 3610 |
| chr12 | 4210637 | 3.16% | 3796 |
| chr13 | 2533722 | 2.22% | 2776 |
| chr14 | 2482990 | 2.32% | 2544 |
| chr15 | 2054721 | 2.01% | 1928 |
| chr16 | 2024185 | 2.24% | 1794 |
| chr17 | 1390671 | 1.67% | 1331 |
| chr18 | 1862416 | 2.32% | 1988 |
| chr19 | 4921469 | 8.40% | 2424 |
| chr20 | 1420018 | 2.20% | 1478 |
| chr21 | 972995 | 2.08% | 1024 |
| chr22 | 791330 | 1.56% | 803 |
| chrX | 944156 | 0.61% | 1236 |
| chrY | 79212 | 0.14% | 111 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 76705 | 210 | 68411 | 1028.33 | 748 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF994CJC.bed.gz | 1.58 MB | 06bd21e55af73bf78b3eed07094a16b2 |
| ENCFF994CJC.tabix.bed.gz | 787.58 KB | 6ad77dd800b643891ee15cfac0e0fbda |
| ENCFF994CJC.tabix.bed.gz.tbi | 339.19 KB | 73fa4db2552910def5497bf1e0ef82aa |
| genomic_resource.yaml | 2.79 KB | fae66bbfc0828abd08bdfbc8dc662170 |
| statistics/ |