Histone_ChIP-seq_ENCSR427TBJ
Histone_ChIP-seq ENCSR427TBJ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR427TBJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR427TBJ [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN335CJR|/analyses/ENCAN335CJR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF033AFR|/files/ENCFF033AFR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF033AFR|/files/ENCFF033AFR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR427TBJ | float |
Histone_ChIP-seq_ENCSR427TBJ |
Histone_ChIP-seq ENCSR427TBJ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K36me3"]
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[1.69, 20.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF862DZK.bed.gz | 1.65 MB | f2ae4a148863ad723f728d00e22805c1 |
| ENCFF862DZK.bed.gz.dvc | 101.0 B | 562e0e2e414f029aa1243155f558b7e3 |
| ENCFF862DZK.tabix.bed.gz | 738.41 KB | 8d9d389c009052709e42817859c5b6f1 |
| ENCFF862DZK.tabix.bed.gz.dvc | 106.0 B | b87aacd15c30ac860b5fe7bed6055463 |
| ENCFF862DZK.tabix.bed.gz.tbi | 135.96 KB | 753cfc42faa0aee418ee5f0b1987a8ed |
| ENCFF862DZK.tabix.bed.gz.tbi.dvc | 110.0 B | c890f05b92025e1c10720dfee3bb9e65 |
| genomic_resource.yaml | 2.8 KB | 1a3d6ea57b029260e95d934f414ea880 |
| genomic_resource_original.yaml | 2.65 KB | 20cbbb231ab7f264e2dff8f8dd071539 |
| statistics/ |