Histone_ChIP-seq_ENCSR427RFW
Histone_ChIP-seq ENCSR427RFW [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H2AK5ac"]
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| Id: | Histone_ChIP-seq/ENCSR427RFW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR427RFW [biosamplesummary="Homo sapiens trophoblast cell originated from H1" and target="H2AK5ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN096FWJ|/analyses/ENCAN096FWJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN096FWJ|/analyses/ENCAN096FWJ/} has in progress subobject document {0d446c82-018d-4d04-9234-fbfb83a3a279|/documents/0d446c82-018d-4d04-9234-fbfb83a3a279/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF356CJH|/files/ENCFF356CJH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF356CJH|/files/ENCFF356CJH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR427RFW | float |
Histone_ChIP-seq_ENCSR427RFW |
Histone_ChIP-seq ENCSR427RFW [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H2AK5ac"]
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[1.61, 13.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF106GQV.bed.gz | 1.35 MB | 392e4945905e301a8ef2a13777dfb4f8 |
| ENCFF106GQV.bed.gz.dvc | 101.0 B | cbfa91138d5b1d3e7def91d79f44c5f0 |
| ENCFF106GQV.tabix.bed.gz | 670.63 KB | 623acd4df35792a9153e0cc959ff4919 |
| ENCFF106GQV.tabix.bed.gz.dvc | 106.0 B | eaf157a20584cb8d2e3b82d400280059 |
| ENCFF106GQV.tabix.bed.gz.tbi | 201.16 KB | 16b375a85e299b79eec76b4b5da473f3 |
| ENCFF106GQV.tabix.bed.gz.tbi.dvc | 110.0 B | ddd864f6267e29635b1f530ef1f5dd74 |
| genomic_resource.yaml | 2.96 KB | 817a2b58329082906f12bf6198ef1aaf |
| genomic_resource_original.yaml | 2.83 KB | 5e5ddabe40235be02f5d00d8b682a2cc |
| statistics/ |