Histone_ChIP-seq_ENCSR426VHO
Histone_ChIP-seq ENCSR426VHO [biosample_summary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR426VHO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR426VHO [biosamplesummary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN019ZCE|/analyses/ENCAN019ZCE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF336HUM|/files/ENCFF336HUM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF336HUM|/files/ENCFF336HUM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR426VHO | float |
Histone_ChIP-seq_ENCSR426VHO |
Histone_ChIP-seq ENCSR426VHO [biosample_summary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K27ac"]
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[1.31, 93.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF538SIJ.bed.gz | 1.93 MB | ced26b6fe8129c0c4cd3eb0a8d263eb8 |
| ENCFF538SIJ.bed.gz.dvc | 101.0 B | 8905868493bbd23b7653bcd506248e98 |
| ENCFF538SIJ.tabix.bed.gz | 851.89 KB | 3517cd4652a5faff81d4c19a557d503b |
| ENCFF538SIJ.tabix.bed.gz.dvc | 106.0 B | cbef83f5fbc10373b91a641084b13bfa |
| ENCFF538SIJ.tabix.bed.gz.tbi | 242.95 KB | 0d8e22d7628e754127325cd2f78edb50 |
| ENCFF538SIJ.tabix.bed.gz.tbi.dvc | 110.0 B | bea66c07bf3f2d247e00278756baf8b7 |
| genomic_resource.yaml | 2.73 KB | 420ca4c129a14c070020bb25448604d7 |
| genomic_resource_original.yaml | 2.6 KB | 69410ea44818a54c0dbeb456e045a44c |
| statistics/ |