Histone_ChIP-seq_ENCSR426UWA
Histone_ChIP-seq ENCSR426UWA [biosample_summary="Homo sapiens HUES64" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR426UWA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR426UWA [biosamplesummary="Homo sapiens HUES64" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN238FCR|/analyses/ENCAN238FCR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF258TLW|/files/ENCFF258TLW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24520826 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF602HGV|/files/ENCFF602HGV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 28153066 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF258TLW|/files/ENCFF258TLW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF258TLW|/files/ENCFF258TLW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR426UWA | float |
Histone_ChIP-seq_ENCSR426UWA |
Histone_ChIP-seq ENCSR426UWA [biosample_summary="Homo sapiens HUES64" and target="H3K36me3"]
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[1.23, 39.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF041EXV.bed.gz | 3.31 MB | 3271f24a26bb63eabba46ed4fd2ad059 |
| ENCFF041EXV.bed.gz.dvc | 101.0 B | ef8538462d68a44f3a7cacc66627b2fd |
| ENCFF041EXV.tabix.bed.gz | 1.52 MB | cf56a90301a6d3ce570b8c28ebb1e49d |
| ENCFF041EXV.tabix.bed.gz.dvc | 107.0 B | d43275d15d5b0fdb6354820b83499713 |
| ENCFF041EXV.tabix.bed.gz.tbi | 171.59 KB | 817980b31645b120a21f0b1810437b4d |
| ENCFF041EXV.tabix.bed.gz.tbi.dvc | 110.0 B | e46a38e19e20f7217732d192d3ac2ce3 |
| genomic_resource.yaml | 3.68 KB | 2a534190c2374b03bfe85dfa10e68327 |
| genomic_resource_original.yaml | 3.57 KB | a30752c71211604152389a029be444df |
| statistics/ |