Resource

Id Histone_ChIP-seq/ENCSR423AKGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR423AKG [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR423AKG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000045/
  • biosample_summary: Homo sapiens foreskin melanocyte male newborn
  • date_created: 2015-09-15T20:27:00.831108+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR423AKG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR423AKG float

Histone_ChIP-seq_ENCSR423AKG
Histone_ChIP-seq ENCSR423AKG [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR423AKG [1.86, 241]
n
40,351,989
mean
79.4
sd
49.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 403519891.25% 24497
chr1 3932187 1.58% 2406
chr2 2761384 1.14% 1653
chr3 2205218 1.11% 1310
chr4 1579804 0.83% 959
chr5 1821585 1.00% 1113
chr6 2363729 1.38% 1418
chr7 1954954 1.23% 1238
chr8 1511395 1.04% 919
chr9 1657282 1.20% 1048
chr10 1684739 1.26% 1045
chr11 2181119 1.61% 1249
chr12 2139901 1.61% 1225
chr13 861234 0.75% 530
chr14 1282709 1.20% 783
chr15 1365917 1.34% 826
chr16 1670007 1.85% 980
chr17 2413011 2.90% 1419
chr18 696088 0.87% 423
chr19 2744063 4.68% 1723
chr20 1022406 1.59% 658
chr21 360115 0.77% 228
chr22 896608 1.76% 555
chrX 1206518 0.77% 764
chrY 40016 0.07% 25
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24497 190 20050 1647.22 1400
global segment-length histogram

Files

Filename Size md5
ENCFF317IXD.bed.gz 708.35 KB 9ef84026839c49d86edf4493ae29c435
ENCFF317IXD.tabix.bed.gz 295.21 KB 75775fb466c6c50c7f719c8deac4393e
ENCFF317IXD.tabix.bed.gz.tbi 157.34 KB f6269896dbaf1ea0868a00364291bbd0
genomic_resource.yaml 1.46 KB 2c9a80eb490f521e6b88aeaceefa526e
statistics/