Histone_ChIP-seq_ENCSR422LQX
Histone_ChIP-seq ENCSR422LQX [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR422LQX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR422LQX [biosamplesummary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN189SBS|/analyses/ENCAN189SBS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF647OUC|/files/ENCFF647OUC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21143161 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF647OUC|/files/ENCFF647OUC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF647OUC|/files/ENCFF647OUC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR422LQX | float |
Histone_ChIP-seq_ENCSR422LQX |
Histone_ChIP-seq ENCSR422LQX [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)" and target="H3K4me1"]
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[1.56, 20.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF990JUO.bed.gz | 1.89 MB | 66dc1fa87d849694a41d49cab1edc82e |
| ENCFF990JUO.bed.gz.dvc | 101.0 B | 656fa7b590cf63ff0a838a2a50438c55 |
| ENCFF990JUO.tabix.bed.gz | 862.75 KB | 69246ff46579ea73b1f050e0c46f99d3 |
| ENCFF990JUO.tabix.bed.gz.dvc | 106.0 B | 7c82886142afb8987a82717cea04f54d |
| ENCFF990JUO.tabix.bed.gz.tbi | 211.76 KB | 47492415991011da6edf8bfd19f73c21 |
| ENCFF990JUO.tabix.bed.gz.tbi.dvc | 110.0 B | 3eeae3ca91aa7ab88ee8301699ac417a |
| genomic_resource.yaml | 3.31 KB | 746a956c65a20babfe2a1bfa1e35f835 |
| genomic_resource_original.yaml | 3.16 KB | 446472fa7c3e05b3b3039a2ffc18d03e |
| statistics/ |