Histone_ChIP-seq_ENCSR421HUB
Histone_ChIP-seq ENCSR421HUB [biosample_summary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR421HUB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR421HUB [biosamplesummary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN496CQC|/analyses/ENCAN496CQC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF917ZBE|/files/ENCFF917ZBE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF917ZBE|/files/ENCFF917ZBE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR421HUB | float |
Histone_ChIP-seq_ENCSR421HUB |
Histone_ChIP-seq ENCSR421HUB [biosample_summary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K4me3"]
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[1.8, 68.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF197CZF.bed.gz | 716.61 KB | 2bb3701b769b44bccb503b53ed1aa2f4 |
| ENCFF197CZF.bed.gz.dvc | 100.0 B | eb6bcc9cc38507a96260d80a8de9f991 |
| ENCFF197CZF.tabix.bed.gz | 307.44 KB | bbaa9eea24be629ba5b98af72379045a |
| ENCFF197CZF.tabix.bed.gz.dvc | 106.0 B | 21a7c4898ac19432c8bbd47e11a63e89 |
| ENCFF197CZF.tabix.bed.gz.tbi | 154.15 KB | 9ad1abff22b88e46a46fc5431bf5b774 |
| ENCFF197CZF.tabix.bed.gz.tbi.dvc | 110.0 B | 8a458360f20788ab39f28611a61a299f |
| genomic_resource.yaml | 2.95 KB | ae915e1542d2844046cf5a06c31c71ab |
| genomic_resource_original.yaml | 2.81 KB | 4bab11622b3510b452a748b4cacfe761 |
| statistics/ |