Resource
| Id | Histone_ChIP-seq/ENCSR420KZB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR420KZB [biosample_summary="Homo sapiens BLaER1 72 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 72 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR420KZB | float |
Histone_ChIP-seq_ENCSR420KZB |
Histone_ChIP-seq ENCSR420KZB [biosample_summary="Homo sapiens BLaER1 72 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K36me3"]
|
 |
[1.37, 17.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 240013550 | 7.46% | 231098 |
| chr1 | 23383338 | 9.39% | 22087 |
| chr1_KI270711v1_random | 4467 | 10.58% | 6 |
| chr2 | 19122456 | 7.90% | 19684 |
| chr3 | 15044854 | 7.59% | 15266 |
| chr3_GL000221v1_random | 269 | 0.17% | 1 |
| chr4 | 10259571 | 5.39% | 11068 |
| chr5 | 13634893 | 7.51% | 13455 |
| chr6 | 10142036 | 5.94% | 11660 |
| chr7 | 12431852 | 7.80% | 12498 |
| chr8 | 11358624 | 7.83% | 9635 |
| chr9 | 9938498 | 7.18% | 9523 |
| chr10 | 11123060 | 8.31% | 11152 |
| chr11 | 11253833 | 8.33% | 10245 |
| chr12 | 12513903 | 9.39% | 11728 |
| chr13 | 5268413 | 4.61% | 5653 |
| chr14 | 7678925 | 7.17% | 7580 |
| chr14_GL000194v1_random | 1839 | 0.96% | 3 |
| chr15 | 8974847 | 8.80% | 8429 |
| chr16 | 10114441 | 11.20% | 8758 |
| chr16_KI270728v1_random | 255 | 0.01% | 1 |
| chr17 | 12517034 | 15.03% | 10740 |
| chr17_GL000205v2_random | 3346 | 1.80% | 7 |
| chr18 | 4311843 | 5.36% | 4699 |
| chr19 | 12602546 | 21.50% | 8615 |
| chr20 | 6512648 | 10.11% | 5648 |
| chr21 | 2841357 | 6.08% | 2703 |
| chr22 | 4968548 | 9.78% | 4302 |
| chrUn_GL000195v1 | 3183 | 1.74% | 9 |
| chrUn_GL000219v1 | 22627 | 12.63% | 21 |
| chrUn_GL000224v1 | 307 | 0.17% | 1 |
| chrUn_KI270438v1 | 815 | 0.72% | 3 |
| chrUn_KI270442v1 | 267 | 0.07% | 1 |
| chrX | 3978382 | 2.55% | 5916 |
| chrY | 273 | <0.01% | 1 |
| 3332 contigs with no values (125583306 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 231098 | 250 | 41088 | 1038.58 | 526 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF035LUP.bed.gz | 4.32 MB | 83004feed2da40e5fbacf5bbc6bdd662 |
| ENCFF035LUP.tabix.bed.gz | 2.15 MB | ad35ac26baa16d73e8cf5581e6287931 |
| ENCFF035LUP.tabix.bed.gz.tbi | 216.17 KB | 21055dcd6aa3710d9984eb58f8564b4b |
| genomic_resource.yaml | 3.12 KB | e7107d39a02a88f1d55f35d0d38d1e65 |
| statistics/ |