Resource

Id Histone_ChIP-seq/ENCSR418JIScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR418JIS [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR418JIS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002305/
  • biosample_summary: Homo sapiens layer of hippocampus tissue female adult (75 years)
  • date_created: 2015-09-15T19:49:18.037949+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR418JIS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (75 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR418JIS float

Histone_ChIP-seq_ENCSR418JIS
Histone_ChIP-seq ENCSR418JIS [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR418JIS [1.95, 44.4]
n
28,435,085
mean
12
sd
6.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 284350850.88% 39652
chr1 2804298 1.13% 3827
chr2 1958532 0.81% 2741
chr3 1699406 0.86% 2238
chr4 1142964 0.60% 1482
chr5 1395823 0.77% 1896
chr6 1654547 0.97% 2256
chr7 1332321 0.84% 1897
chr8 1072213 0.74% 1549
chr9 1174143 0.85% 1671
chr10 1221091 0.91% 1750
chr11 1579724 1.17% 2193
chr12 1470139 1.10% 1978
chr13 627749 0.55% 889
chr14 947376 0.89% 1269
chr15 913508 0.90% 1293
chr16 1122146 1.24% 1575
chr17 1597519 1.92% 2269
chr18 497735 0.62% 751
chr19 1878835 3.21% 2594
chr20 729332 1.13% 1054
chr21 269473 0.58% 408
chr22 623813 1.23% 904
chrX 722398 0.46% 1168
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39652 150 7144 717.12 533
global segment-length histogram

Files

Filename Size md5
ENCFF216OMD.bed.gz 867.45 KB 1be3b14ba7250bb2163b7a86866eac7b
ENCFF216OMD.tabix.bed.gz 411.27 KB 3c691aee094dd66b5f45412c7fa06d84
ENCFF216OMD.tabix.bed.gz.tbi 176.48 KB daacaae415dfca070e978e0dd4a6a484
genomic_resource.yaml 1.54 KB 92b95df9de0c86dbc4675157972d67bf
statistics/