Histone_ChIP-seq_ENCSR416CYZ
Histone_ChIP-seq ENCSR416CYZ [biosample_summary="Homo sapiens thoracic aorta tissue male adult (54 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR416CYZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR416CYZ [biosamplesummary="Homo sapiens thoracic aorta tissue male adult (54 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN843MVE|/analyses/ENCAN843MVE/} has in progress subobject document {319d4a36-b544-4839-ae20-8885486a579d|/documents/319d4a36-b544-4839-ae20-8885486a579d/} audit_internal_action: Released analysis {ENCAN843MVE|/analyses/ENCAN843MVE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF756ZJP|/files/ENCFF756ZJP/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 44043653 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF542KRW|/files/ENCFF542KRW/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF542KRW|/files/ENCFF542KRW/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.38. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR416CYZ | float |
Histone_ChIP-seq_ENCSR416CYZ |
Histone_ChIP-seq ENCSR416CYZ [biosample_summary="Homo sapiens thoracic aorta tissue male adult (54 years)" and target="H3K4me1"]
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[1.61, 7.18] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF887LPK.bed.gz | 2.32 MB | 44f8371e2ce68ba709ee395ccf401f91 |
| ENCFF887LPK.bed.gz.dvc | 101.0 B | cf251dbe30cfd5133004430f3287a196 |
| ENCFF887LPK.tabix.bed.gz | 1.11 MB | 049caaf5fb69f512a8e0fc71470f23a7 |
| ENCFF887LPK.tabix.bed.gz.dvc | 107.0 B | 0ead3c5dfd526937bd9ec9b6ee1afbfc |
| ENCFF887LPK.tabix.bed.gz.tbi | 304.21 KB | 502b8eff8fb388058ac76f8d2aa6a5ca |
| ENCFF887LPK.tabix.bed.gz.tbi.dvc | 110.0 B | 0efa1e20ffec31be53135bd9d7cfb934 |
| genomic_resource.yaml | 3.47 KB | 63f1713c16c53b1b29f8035de4c473f6 |
| genomic_resource_original.yaml | 3.33 KB | 0551243b19c458e8f33967e0fac69998 |
| statistics/ |