Resource

Id Histone_ChIP-seq/ENCSR413WJDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR413WJD [biosample_summary="Homo sapiens lung tissue embryo (101 days)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR413WJD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue embryo (101 days)
  • date_created: 2015-09-15T19:52:11.631642+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR413WJD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (101 days)
  • status: released
  • submitter_comment: As of June 22, 2017, this experiment's biosample (and donor) has been changed. A SNP-analysis shows that the original donor (ENCDO670CKN) was incorrect. 10/27/17: Control biosample.summary does not match Experiment (former control: ENCSR254NDP).
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR413WJD float

Histone_ChIP-seq_ENCSR413WJD
Histone_ChIP-seq ENCSR413WJD [biosample_summary="Homo sapiens lung tissue embryo (101 days)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR413WJD [1.82, 54.3]
n
26,521,846
mean
11.9
sd
7.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 265218460.82% 47623
chr1 2463476 0.99% 4057
chr2 2007549 0.83% 3479
chr3 1763776 0.89% 3087
chr4 1431287 0.75% 2600
chr5 1485943 0.82% 2637
chr6 1810513 1.06% 2936
chr7 1294353 0.81% 2278
chr8 1058572 0.73% 1974
chr9 1067663 0.77% 2032
chr10 1207741 0.90% 2229
chr11 1292915 0.96% 2325
chr12 1535987 1.15% 2684
chr13 711815 0.62% 1343
chr14 900105 0.84% 1562
chr15 854627 0.84% 1503
chr16 699591 0.77% 1405
chr17 1199541 1.44% 2151
chr18 554097 0.69% 1049
chr19 1370723 2.34% 2907
chr20 548153 0.85% 1028
chr21 249921 0.54% 477
chr22 365646 0.72% 688
chrX 607661 0.39% 1131
chrY 40191 0.07% 61
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47623 150 9030 556.91 387
global segment-length histogram

Files

Filename Size md5
ENCFF235QPP.bed.gz 1018.16 KB 6b741888ac5c5d30fb4cabe33dc90eec
ENCFF235QPP.tabix.bed.gz 484.31 KB 7acfe3b26fbadeb8263056b94224ebe3
ENCFF235QPP.tabix.bed.gz.tbi 212.92 KB 5ba55c2f4b242d92ed9b8d4d1a051242
genomic_resource.yaml 2.19 KB d9f3fea0cd0c4e0c0b21501f246d62bb
statistics/