Resource

Id Histone_ChIP-seq/ENCSR413CHOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR413CHO [biosample_summary="Homo sapiens transverse colon tissue male adult (54 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR413CHO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue male adult (54 years)
  • date_created: 2017-12-06T21:02:11.837586+00:00
  • date_released: 2019-09-13
  • doi: 10.17989/ENCSR413CHO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR413CHO float

Histone_ChIP-seq_ENCSR413CHO
Histone_ChIP-seq ENCSR413CHO [biosample_summary="Homo sapiens transverse colon tissue male adult (54 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR413CHO [1.19, 8.31]
n
16,986,339
mean
3.18
sd
0.844

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 169863390.53% 36494
chr1 938083 0.38% 2182
chr2 907711 0.37% 2329
chr3 801917 0.40% 2058
chr4 954970 0.50% 2254
chr5 1233043 0.68% 2705
chr6 735055 0.43% 1903
chr7 1207183 0.76% 2587
chr8 815520 0.56% 2022
chr9 544931 0.39% 1216
chr10 669076 0.50% 1564
chr11 819269 0.61% 1841
chr12 966992 0.73% 1957
chr13 380151 0.33% 1087
chr14 399605 0.37% 1032
chr15 442640 0.43% 1023
chr16 540222 0.60% 1071
chr17 251438 0.30% 573
chr18 277893 0.35% 725
chr19 3300613 5.63% 4355
chr20 187379 0.29% 474
chr21 421651 0.90% 1011
chr22 106368 0.21% 253
chrX 40534 0.03% 112
chrY 44095 0.08% 160
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36494 115 24655 465.46 321
global segment-length histogram

Files

Filename Size md5
ENCFF309ZHC.bed.gz 686.31 KB ea7b43f3bbe25a9cf688d582ceb486f4
ENCFF309ZHC.tabix.bed.gz 348.62 KB 859dcf5e01d202a676e35be66a3cfa16
ENCFF309ZHC.tabix.bed.gz.tbi 160.94 KB 9ccd67630f6c8a5001680bcbc4b9ec70
genomic_resource.yaml 1.51 KB fdf5fa0e3eee4ecf9f0f802bc6184cfd
statistics/