Resource
| Id | Histone_ChIP-seq/ENCSR410GUN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR410GUN [biosample_summary="Homo sapiens HUES6" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN708KOK|/analyses/ENCAN708KOK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN708KOK|/analyses/ENCAN708KOK/} has in progress subobject document {c9532568-eb2d-4a95-8050-2ad943960325|/documents/c9532568-eb2d-4a95-8050-2ad943960325/} audit_not_compliant: Processed alignments file {ENCFF452LUV|/files/ENCFF452LUV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 23538810 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF051QTG|/files/ENCFF051QTG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 24594507 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR410GUN | float |
Histone_ChIP-seq_ENCSR410GUN |
Histone_ChIP-seq ENCSR410GUN [biosample_summary="Homo sapiens HUES6" and target="H3K27me3"]
|
 |
[1.55, 77.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 71120161 | 2.21% | 61492 |
| chr1 | 6844883 | 2.75% | 6067 |
| chr2 | 4690897 | 1.94% | 3723 |
| chr3 | 2850376 | 1.44% | 2373 |
| chr4 | 2839165 | 1.49% | 2086 |
| chr5 | 3379998 | 1.86% | 2595 |
| chr6 | 3580602 | 2.10% | 2550 |
| chr7 | 3467208 | 2.18% | 2767 |
| chr8 | 2970597 | 2.05% | 2620 |
| chr9 | 2996831 | 2.17% | 2591 |
| chr10 | 3323114 | 2.48% | 2582 |
| chr11 | 4078778 | 3.02% | 3557 |
| chr12 | 3986209 | 2.99% | 3191 |
| chr13 | 1399901 | 1.22% | 1029 |
| chr14 | 1995122 | 1.86% | 1625 |
| chr15 | 2241296 | 2.20% | 1819 |
| chr16 | 2431203 | 2.69% | 2242 |
| chr17 | 3630477 | 4.36% | 2957 |
| chr18 | 1389281 | 1.73% | 1119 |
| chr19 | 3313037 | 5.65% | 3235 |
| chr20 | 2625422 | 4.07% | 2586 |
| chr21 | 488777 | 1.05% | 416 |
| chr22 | 2064575 | 4.06% | 1665 |
| chrX | 4532412 | 2.90% | 6097 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61492 | 168 | 89082 | 1156.58 | 593 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF456EQK.bed.gz | 1.41 MB | c7a207ad4306a64220c8f7c52900ff47 |
| ENCFF456EQK.tabix.bed.gz | 652.41 KB | 049b9c9a95cd837e38fd59de199b75ef |
| ENCFF456EQK.tabix.bed.gz.tbi | 162.0 KB | f30eac29092d2ce4294e8a584bb91343 |
| genomic_resource.yaml | 2.61 KB | 88e299a0b32adf4d051965cd8fdd66f8 |
| statistics/ |