Resource

Id Histone_ChIP-seq/ENCSR410BCNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR410BCN [biosample_summary="Homo sapiens A549" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR410BCN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001086/
  • biosample_summary: Homo sapiens A549
  • date_created: 2016-05-25T23:23:58.540170+00:00
  • date_released: 2016-07-21
  • doi: 10.17989/ENCSR410BCN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR410BCN float

Histone_ChIP-seq_ENCSR410BCN
Histone_ChIP-seq ENCSR410BCN [biosample_summary="Homo sapiens A549" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR410BCN [1.96, 29.2]
n
81,323,517
mean
8.68
sd
3.65

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 813235172.53% 91349
chr1 7369186 2.96% 8420
chr1_KI270706v1_random 261 0.15% 1
chr1_KI270712v1_random 4190 2.38% 8
chr1_KI270713v1_random 3658 8.98% 9
chr1_KI270714v1_random 433 1.04% 1
chr2 6752025 2.79% 7365
chr3 4823682 2.43% 5570
chr4 3556819 1.87% 4283
chr5 4433127 2.44% 5007
chr6 4749540 2.78% 5613
chr7 4259392 2.67% 4744
chr8 3711186 2.56% 4103
chr9 3737573 2.70% 3961
chr10 4074658 3.05% 4530
chr11 4008010 2.97% 4412
chr12 4396696 3.30% 4813
chr13 1618134 1.41% 2021
chr14 2547571 2.38% 2856
chr14_GL000194v1_random 925 0.48% 2
chr15 2849652 2.79% 3037
chr16 2664390 2.95% 2990
chr17 4377722 5.26% 4438
chr17_GL000205v2_random 5514 2.97% 10
chr18 1503845 1.87% 1898
chr19 3122794 5.33% 3404
chr20 2355831 3.66% 2565
chr21 678114 1.45% 820
chr22 1461845 2.88% 1726
chr22_KI270733v1_random 1706 0.95% 4
chrUn_GL000195v1 6478 3.54% 13
chrUn_GL000214v1 203 0.15% 1
chrUn_GL000219v1 2557 1.43% 5
chrUn_GL000220v1 1246 0.77% 4
chrUn_KI270744v1 2070 1.23% 8
chrX 2191092 1.40% 2636
chrY 51392 0.09% 71
3330 contigs with no values (127256607 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 91349 190 27787 890.25 647
global segment-length histogram

Files

Filename Size md5
ENCFF584GUD.bed.gz 1.5 MB afd13a76ae962e48005298d2a5fbc004
ENCFF584GUD.tabix.bed.gz 979.67 KB 8670443a3590f2d8370523856def6d73
ENCFF584GUD.tabix.bed.gz.tbi 307.29 KB a8e9eee6b260c8e09fa00143aa8c43c1
genomic_resource.yaml 1.3 KB f501e1ae2eafb92112099380d4dfe60a
statistics/