| Id: | Histone_ChIP-seq/ENCSR409RGJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR409RGJ [biosamplesummary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (17 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN653MVK|/analyses/ENCAN653MVK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF312QHT|/files/ENCFF312QHT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF312QHT|/files/ENCFF312QHT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.27. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR409RGJ | float |
Histone_ChIP-seq_ENCSR409RGJ |
Histone_ChIP-seq ENCSR409RGJ [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K4me1"]
|
 |
[1.68, 23.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF940QJB.bed.gz | 4.33 MB | 7d5a2fdc558837e4c69f0f76b7551d3e |
| ENCFF940QJB.bed.gz.dvc | 101.0 B | 9fbb39764f1e769467a4e6aa52839608 |
| ENCFF940QJB.tabix.bed.gz | 2.04 MB | f12d8b1a77af641e38a7c85ba7d88f5e |
| ENCFF940QJB.tabix.bed.gz.dvc | 107.0 B | c435592db543de277a91674220a628e5 |
| ENCFF940QJB.tabix.bed.gz.tbi | 455.59 KB | 545d7e911e6b3fd695aba58b84c7b27d |
| ENCFF940QJB.tabix.bed.gz.tbi.dvc | 110.0 B | 822a9ade5b64b9c3a9f015748cf2e01b |
| genomic_resource.yaml | 2.89 KB | 848bd6616b366a10bf9964a1e287e514 |
| genomic_resource_original.yaml | 2.72 KB | d740919a2a48e3578d3e754a51123b63 |
| statistics/ |