Resource
| Id | Histone_ChIP-seq/ENCSR406VUH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR406VUH [biosample_summary="Homo sapiens thymus tissue female embryo (110 days)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (110 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN008JZY|/analyses/ENCAN008JZY/} has in progress subobject document {941551f9-004c-4fef-916c-20a0acd43d15|/documents/941551f9-004c-4fef-916c-20a0acd43d15/} audit_internal_action: Released analysis {ENCAN008JZY|/analyses/ENCAN008JZY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF400FIY|/files/ENCFF400FIY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 26210716 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR406VUH | float |
Histone_ChIP-seq_ENCSR406VUH |
Histone_ChIP-seq ENCSR406VUH [biosample_summary="Homo sapiens thymus tissue female embryo (110 days)" and target="H3K9me3"]
|
 |
[2.09, 29.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 39213543 | 1.22% | 68255 |
| chr1 | 2324495 | 0.93% | 4170 |
| chr2 | 3144156 | 1.30% | 5721 |
| chr3 | 2486884 | 1.25% | 4535 |
| chr4 | 2746285 | 1.44% | 4924 |
| chr5 | 2371565 | 1.31% | 4223 |
| chr6 | 2370936 | 1.39% | 4356 |
| chr7 | 2929811 | 1.84% | 4918 |
| chr8 | 1957324 | 1.35% | 2950 |
| chr9 | 1254232 | 0.91% | 2217 |
| chr10 | 1598120 | 1.19% | 2917 |
| chr11 | 1470651 | 1.09% | 2573 |
| chr12 | 2070987 | 1.55% | 3371 |
| chr13 | 1315449 | 1.15% | 2353 |
| chr14 | 1036147 | 0.97% | 1863 |
| chr15 | 845132 | 0.83% | 1467 |
| chr16 | 1066652 | 1.18% | 1719 |
| chr17 | 1212361 | 1.46% | 2112 |
| chr18 | 768283 | 0.96% | 1384 |
| chr19 | 2961103 | 5.05% | 4685 |
| chr20 | 632690 | 0.98% | 1071 |
| chr21 | 653804 | 1.40% | 1141 |
| chr22 | 531228 | 1.05% | 954 |
| chrX | 1463926 | 0.94% | 2628 |
| chrY | 1322 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 68255 | 190 | 38057 | 574.52 | 457 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF965WUI.bed.gz | 1.25 MB | 199cd1c5b1f360342a676472245c1372 |
| ENCFF965WUI.tabix.bed.gz | 647.35 KB | 984f8c10b606ec53e01d020ed9b98126 |
| ENCFF965WUI.tabix.bed.gz.tbi | 314.74 KB | a17299ceb4f1c669d020b2dc086ef8a6 |
| genomic_resource.yaml | 2.2 KB | 3589978bc5be52dbe642f74a1c633455 |
| statistics/ |