type: position_score
table:
  filename: ENCFF965WUI.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR406VUH
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR406VUH [TISSUE: Homo sapiens thymus tissue female embryo
    (110 days), TARGET: H3K9me3]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: female embryo (110 days)


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN008JZY|/analyses/ENCAN008JZY/}
    has in progress subobject document {941551f9-004c-4fef-916c-20a0acd43d15|/documents/941551f9-004c-4fef-916c-20a0acd43d15/}


    **audit\_internal\_action**: Released analysis {ENCAN008JZY|/analyses/ENCAN008JZY/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_not\_compliant**: Processed unfiltered alignments file {ENCFF400FIY|/files/ENCFF400FIY/}
    processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 26210716 mapped reads.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR406VUH
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female embryo (110 days)
    biosample_summary: Homo sapiens thymus tissue female embryo (110 days)
    replication_type: unreplicated
    biosample_ontology: /biosample-types/tissue_UBERON_0002370/
    perturbed: false
    doi: 10.17989/ENCSR406VUH
    date_created: '2015-09-16T21:43:01.208725+00:00'
    date_released: '2013-07-31'
    submitter_comment: ''
    target: H3K9me3
