Resource

Id Histone_ChIP-seq/ENCSR406PCKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR406PCK [biosample_summary="Homo sapiens adrenal gland tissue male adult (54 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR406PCK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002369/
  • biosample_summary: Homo sapiens adrenal gland tissue male adult (54 years)
  • date_created: 2016-03-19T00:36:46.448661+00:00
  • date_released: 2016-10-24
  • doi: 10.17989/ENCSR406PCK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR406PCK float

Histone_ChIP-seq_ENCSR406PCK
Histone_ChIP-seq ENCSR406PCK [biosample_summary="Homo sapiens adrenal gland tissue male adult (54 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR406PCK [1.23, 6.5]
n
4,363,503
mean
3.13
sd
0.584

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 43635030.14% 21343
chr1 484683 0.19% 2375
chr2 350786 0.14% 1697
chr3 255585 0.13% 1301
chr4 139402 0.07% 755
chr5 191608 0.11% 986
chr6 196777 0.12% 1038
chr7 185105 0.12% 953
chr8 165831 0.11% 837
chr9 211680 0.15% 1013
chr10 228004 0.17% 1095
chr11 243006 0.18% 1162
chr12 237471 0.18% 1164
chr13 68848 0.06% 383
chr14 154909 0.14% 770
chr15 135598 0.13% 675
chr16 181301 0.20% 836
chr17 306415 0.37% 1352
chr18 69242 0.09% 364
chr19 219276 0.37% 989
chr20 143320 0.22% 675
chr21 47616 0.10% 237
chr22 139463 0.27% 638
chrM 374 2.26% 3
chrX 6269 <0.01% 39
chrY 934 <0.01% 6
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21343 95 1736 204.45 167
global segment-length histogram

Files

Filename Size md5
ENCFF229EUB.bed.gz 403.03 KB 09248a0eda708847a82140d8a064b0f7
ENCFF229EUB.tabix.bed.gz 213.13 KB 97f889b98a6c6ffe4c7cfed2aceceff2
ENCFF229EUB.tabix.bed.gz.tbi 115.19 KB 32b1c5141da6fc73475bc889f26d3b34
genomic_resource.yaml 1.98 KB 3a2456fb1debd36e82d06d1960aea0df
statistics/