Resource
| Id | Histone_ChIP-seq/ENCSR404LJZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR404LJZ [biosample_summary="Homo sapiens MM.1S" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN308UJZ|/analyses/ENCAN308UJZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF283HZB|/files/ENCFF283HZB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 28426246 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR404LJZ | float |
Histone_ChIP-seq_ENCSR404LJZ |
Histone_ChIP-seq ENCSR404LJZ [biosample_summary="Homo sapiens MM.1S" and target="H3K27me3"]
|
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[1.46, 13.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 73327694 | 2.28% | 60005 |
| chr1 | 11829674 | 4.75% | 8449 |
| chr2 | 2123609 | 0.88% | 1947 |
| chr3 | 1829009 | 0.92% | 1737 |
| chr4 | 2473003 | 1.30% | 1533 |
| chr5 | 1630630 | 0.90% | 1658 |
| chr6 | 1415316 | 0.83% | 1398 |
| chr7 | 3578343 | 2.25% | 3072 |
| chr8 | 2464353 | 1.70% | 1840 |
| chr9 | 4426267 | 3.20% | 2947 |
| chr10 | 2296012 | 1.72% | 2123 |
| chr11 | 4762892 | 3.53% | 3576 |
| chr12 | 1917339 | 1.44% | 1690 |
| chr13 | 490977 | 0.43% | 379 |
| chr14 | 808082 | 0.75% | 1018 |
| chr15 | 885268 | 0.87% | 852 |
| chr16 | 2944087 | 3.26% | 2823 |
| chr17 | 6511467 | 7.82% | 4961 |
| chr18 | 255465 | 0.32% | 300 |
| chr19 | 9772104 | 16.67% | 10156 |
| chr20 | 4167488 | 6.47% | 2773 |
| chr21 | 2213392 | 4.74% | 1143 |
| chr22 | 4263708 | 8.39% | 3321 |
| chrX | 268309 | 0.17% | 307 |
| chrY | 900 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 60005 | 190 | 21547 | 1222.03 | 762 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF564UOD.bed.gz | 1.24 MB | 760fcc897005281a100158266e25559a |
| ENCFF564UOD.tabix.bed.gz | 600.31 KB | 6375716699ff3ac742f3a0074574157e |
| ENCFF564UOD.tabix.bed.gz.tbi | 81.49 KB | d3c58a8894ee39ee55a4a1de5abad920 |
| genomic_resource.yaml | 1.87 KB | 10c21a38253a79a50d00c5cd80eb2aab |
| statistics/ |
