Resource

Id Histone_ChIP-seq/ENCSR403UOUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR403UOU [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR403UOU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008367/
  • biosample_summary: Homo sapiens breast epithelium tissue female adult (53 years)
  • date_created: 2016-10-22T16:07:57.042893+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR403UOU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR403UOU float

Histone_ChIP-seq_ENCSR403UOU
Histone_ChIP-seq ENCSR403UOU [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR403UOU [1.51, 15.7]
n
16,261,990
mean
4.65
sd
1.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 162619900.51% 50152
chr1 860045 0.35% 2900
chr1_KI270706v1_random 303 0.17% 2
chr1_KI270708v1_random 224 0.18% 2
chr1_KI270709v1_random 4600 6.88% 9
chr1_KI270712v1_random 2227 1.27% 5
chr2 915237 0.38% 3175
chr2_KI270716v1_random 508 0.33% 2
chr3 786621 0.40% 2738
chr4 887435 0.47% 2990
chr4_GL000008v2_random 5085 2.42% 5
chr5 1107152 0.61% 3316
chr5_GL000208v1_random 792 0.85% 5
chr6 626622 0.37% 2283
chr7 993378 0.62% 3306
chr8 645666 0.44% 2243
chr9 558283 0.40% 1784
chr9_KI270719v1_random 2628 1.49% 7
chr9_KI270720v1_random 558 1.43% 2
chr10 718282 0.54% 2356
chr11 563606 0.42% 1973
chr12 826333 0.62% 2414
chr13 327369 0.29% 1208
chr14 371108 0.35% 1251
chr14_GL000009v2_random 1165 0.58% 8
chr14_GL000194v1_random 1441 0.75% 6
chr14_GL000225v1_random 42755 20.25% 95
chr14_KI270722v1_random 9959 5.13% 20
chr14_KI270723v1_random 1835 4.81% 7
chr14_KI270724v1_random 1578 3.99% 5
chr14_KI270725v1_random 653 0.38% 3
chr15 370355 0.36% 1093
chr16 433399 0.48% 1306
chr16_KI270728v1_random 1018 0.05% 5
chr17 277370 0.33% 911
chr17_GL000205v2_random 2087 1.12% 8
chr17_KI270729v1_random 29022 10.33% 75
chr17_KI270730v1_random 12300 10.93% 29
chr18 276400 0.34% 1015
chr19 2735666 4.67% 5590
chr20 281896 0.44% 951
chr21 314252 0.67% 825
chr22 187245 0.37% 587
chr22_KI270732v1_random 2708 6.52% 5
chr22_KI270733v1_random 6183 3.44% 22
chr22_KI270735v1_random 4838 11.30% 8
chr22_KI270736v1_random 68579 37.70% 145
chr22_KI270737v1_random 103 0.10% 1
chr22_KI270738v1_random 3304 3.32% 16
chrUn_GL000214v1 1433 1.04% 8
chrUn_GL000216v2 46886 26.55% 82
chrUn_GL000218v1 692 0.43% 4
chrUn_GL000219v1 3056 1.71% 13
chrUn_GL000220v1 407 0.25% 2
chrUn_GL000224v1 6507 3.62% 21
chrUn_KI270429v1 456 33.50% 1
chrUn_KI270435v1 2724 2.93% 10
chrUn_KI270438v1 13582 12.07% 45
chrUn_KI270442v1 81621 20.82% 168
chrUn_KI270465v1 242 13.64% 1
chrUn_KI270507v1 466 8.71% 3
chrUn_KI270512v1 1362 6.00% 4
chrUn_KI270515v1 252 3.96% 1
chrUn_KI270516v1 406 31.23% 1
chrUn_KI270519v1 5318 3.85% 24
chrUn_KI270538v1 1017 1.11% 4
chrUn_KI270584v1 558 12.36% 2
chrUn_KI270589v1 2806 6.31% 2
chrUn_KI270590v1 621 13.26% 1
chrUn_KI270591v1 764 13.18% 1
chrUn_KI270742v1 692 0.37% 6
chrUn_KI270743v1 418 0.20% 3
chrUn_KI270744v1 2946 1.75% 9
chrUn_KI270746v1 972 1.46% 3
chrUn_KI270749v1 2913 1.83% 6
chrUn_KI270750v1 193 0.13% 1
chrUn_KI270751v1 3132 2.08% 9
chrUn_KI270754v1 1097 2.73% 6
chrUn_KI270756v1 1841 2.31% 5
chrUn_KI270757v1 5248 7.37% 10
chrX 776986 0.50% 2918
chrY 24203 0.04% 66
3285 contigs with no values (120506279 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50152 90 16410 324.25 239
global segment-length histogram

Files

Filename Size md5
ENCFF328PQF.bed.gz 873.37 KB d15de829c97cf12c95afd048e8bceabc
ENCFF328PQF.tabix.bed.gz 453.89 KB 8aff15108a1238031a091b3f309ec53a
ENCFF328PQF.tabix.bed.gz.tbi 219.33 KB 71cc68a88a532273b7d939bb472c3ad1
genomic_resource.yaml 1.53 KB 6db55ff0ce9d862700d2d820c5c0ec05
statistics/