Histone_ChIP-seq_ENCSR403PEI
Histone_ChIP-seq ENCSR403PEI [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (51 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR403PEI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR403PEI [biosamplesummary="Homo sapiens esophagus muscularis mucosa tissue female adult (51 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (51 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN761BYF|/analyses/ENCAN761BYF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF552EIR|/files/ENCFF552EIR/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF552EIR|/files/ENCFF552EIR/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.32. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR403PEI | float |
Histone_ChIP-seq_ENCSR403PEI |
Histone_ChIP-seq ENCSR403PEI [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (51 years)" and target="H3K4me3"]
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[1.3, 106] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF821CCT.bed.gz | 880.14 KB | 2f6d2043b03a742a5312cf359bee0a22 |
| ENCFF821CCT.bed.gz.dvc | 100.0 B | 38edbea868d8b785712c90770d7f8936 |
| ENCFF821CCT.tabix.bed.gz | 361.57 KB | 1dd0749b050e4c7ce6e9514b3066fa91 |
| ENCFF821CCT.tabix.bed.gz.dvc | 106.0 B | c8c20f87d26acc58d0d11eeb06078142 |
| ENCFF821CCT.tabix.bed.gz.tbi | 187.8 KB | 7d5379ea7e7373984fb8db04c46ec3b7 |
| ENCFF821CCT.tabix.bed.gz.tbi.dvc | 110.0 B | bd572779f4e4dc8b2e6df8307c916608 |
| genomic_resource.yaml | 2.81 KB | 0f6f342a15d5216f35992a45a0046ada |
| genomic_resource_original.yaml | 2.65 KB | 831e56a3d86a5f644f40979b78c5f13d |
| statistics/ |