Resource

Id Histone_ChIP-seq/ENCSR403KAAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR403KAA [biosample_summary="Homo sapiens fibroblast of breast female adult (17 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR403KAA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0003079/
  • biosample_summary: Homo sapiens fibroblast of breast female adult (17 years)
  • date_created: 2015-09-15T20:26:34.102472+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR403KAA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (17 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR403KAA float

Histone_ChIP-seq_ENCSR403KAA
Histone_ChIP-seq ENCSR403KAA [biosample_summary="Homo sapiens fibroblast of breast female adult (17 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR403KAA [1.93, 42.4]
n
23,175,363
mean
13.1
sd
5.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 231753630.72% 18579
chr1 2303697 0.93% 1820
chr2 1640228 0.68% 1264
chr3 1375049 0.69% 1061
chr4 1034063 0.54% 750
chr5 1174801 0.65% 898
chr6 1413091 0.83% 1114
chr7 1168602 0.73% 936
chr8 877589 0.60% 680
chr9 964477 0.70% 781
chr10 998458 0.75% 775
chr11 1234691 0.91% 970
chr12 1289157 0.97% 978
chr13 489513 0.43% 389
chr14 748685 0.70% 594
chr15 770347 0.76% 627
chr16 866068 0.96% 730
chr17 1268984 1.52% 1030
chr18 391418 0.49% 320
chr19 1352609 2.31% 1231
chr20 537830 0.83% 449
chr21 210415 0.45% 185
chr22 472218 0.93% 416
chrX 593373 0.38% 581
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18579 205 9371 1247.4 1075
global segment-length histogram

Files

Filename Size md5
ENCFF677UAO.bed.gz 492.61 KB 1d5379fe257626bf143edd3e05594d48
ENCFF677UAO.tabix.bed.gz 214.67 KB 9fa525b49b7640ae0ca96cd044c0ea59
ENCFF677UAO.tabix.bed.gz.tbi 123.77 KB 5cf497b2aa4db9979aebc50b135f9297
genomic_resource.yaml 2.01 KB 0b24c3191c85d64465caa331acc6a28a
statistics/