Resource

Id Histone_ChIP-seq/ENCSR402SJVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR402SJV [biosample_summary="Homo sapiens PC-9" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR402SJV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002847/
  • biosample_summary: Homo sapiens PC-9
  • date_created: 2014-10-24T16:18:15.914107+00:00
  • date_released: 2016-05-06
  • doi: 10.17989/ENCSR402SJV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR402SJV float

Histone_ChIP-seq_ENCSR402SJV
Histone_ChIP-seq ENCSR402SJV [biosample_summary="Homo sapiens PC-9" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR402SJV [1.51, 6.77]
n
59,362,744
mean
2.97
sd
0.604

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 593627441.85% 69488
chr1 6608379 2.65% 7581
chr2 6086557 2.51% 7002
chr3 4340395 2.19% 5066
chr4 1147989 0.60% 1542
chr5 3698212 2.04% 4359
chr6 3043185 1.78% 3608
chr7 3858581 2.42% 4360
chr8 2016039 1.39% 2391
chr9 1868108 1.35% 2394
chr10 1588840 1.19% 1944
chr11 3740676 2.77% 4139
chr12 3222517 2.42% 3834
chr13 1490097 1.30% 1838
chr14 1958992 1.83% 2268
chr15 1116342 1.09% 1477
chr16 2083429 2.31% 2538
chr17 2856989 3.43% 3482
chr18 919014 1.14% 1233
chr19 3260003 5.56% 3264
chr20 2115452 3.28% 2378
chr21 269381 0.58% 357
chr22 1334570 2.63% 1457
chrX 738997 0.47% 976
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69488 203 13775 854.29 660
global segment-length histogram

Files

Filename Size md5
ENCFF457NNG.bed.gz 1.52 MB 9fed072538b3519b44bbbfffb9bf1f18
ENCFF457NNG.tabix.bed.gz 722.07 KB 57385298847b8a7ec8a60084982fba7c
ENCFF457NNG.tabix.bed.gz.tbi 143.29 KB 5004e5ed669dcab22c5f8401ff24afc9
genomic_resource.yaml 1.87 KB bfc25310df508f6ce427d97e983804a9
statistics/