Histone_ChIP-seq_ENCSR401CJA
Histone_ChIP-seq ENCSR401CJA [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive female adult (33 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR401CJA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR401CJA [biosamplesummary="Homo sapiens common myeloid progenitor, CD34-positive female adult (33 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN322CVP|/analyses/ENCAN322CVP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF987NMA|/files/ENCFF987NMA/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline has 10087544 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF987NMA|/files/ENCFF987NMA/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF987NMA|/files/ENCFF987NMA/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR401CJA | float |
Histone_ChIP-seq_ENCSR401CJA |
Histone_ChIP-seq ENCSR401CJA [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive female adult (33 years)" and target="H3K4me1"]
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[2.25, 31.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF705SRJ.bed.gz | 2.43 MB | d180367409d44cb8f6b85f174639707b |
| ENCFF705SRJ.bed.gz.dvc | 101.0 B | 284902a31bf2f6ce4c4b03d5b4dec04b |
| ENCFF705SRJ.tabix.bed.gz | 1.17 MB | 5b8ad5df6183d45d5f26cffa6b744db5 |
| ENCFF705SRJ.tabix.bed.gz.dvc | 107.0 B | ca5d03e4c47925227dbc89c51802f827 |
| ENCFF705SRJ.tabix.bed.gz.tbi | 318.26 KB | 3b126bbdd5676ab42cfc16fbe556b2de |
| ENCFF705SRJ.tabix.bed.gz.tbi.dvc | 110.0 B | a8e72d325d9c30df0cee1bba2628a2f6 |
| genomic_resource.yaml | 3.36 KB | 9d945ef339a7acc0281d5ae375917e6f |
| genomic_resource_original.yaml | 3.2 KB | b033b0ce0df8bec5e6b48ffe1444e80c |
| statistics/ |