Histone_ChIP-seq_ENCSR399VPY
Histone_ChIP-seq ENCSR399VPY [biosample_summary="Homo sapiens MM.1S" and target="H3K9me2"]
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| Id: | Histone_ChIP-seq/ENCSR399VPY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR399VPY [biosamplesummary="Homo sapiens MM.1S" and target="H3K9me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN192FIS|/analyses/ENCAN192FIS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN192FIS|/analyses/ENCAN192FIS/} has in progress subobject document {71bafd26-75ef-4bcc-abd2-96f54e857129|/documents/71bafd26-75ef-4bcc-abd2-96f54e857129/} audit_not_compliant: Processed alignments file {ENCFF278ELC|/files/ENCFF278ELC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 30546060 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF278ELC|/files/ENCFF278ELC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF278ELC|/files/ENCFF278ELC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR399VPY | float |
Histone_ChIP-seq_ENCSR399VPY |
Histone_ChIP-seq ENCSR399VPY [biosample_summary="Homo sapiens MM.1S" and target="H3K9me2"]
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[1.83, 4.31] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF564TPJ.bed.gz | 11.87 KB | b00fa21e3bdf420b2df5a54bc7f3b770 |
| ENCFF564TPJ.bed.gz.dvc | 99.0 B | e9d5f51870b9b0ea6c7d9ed6ab2a5f77 |
| ENCFF564TPJ.tabix.bed.gz | 5.78 KB | 4fa8ebdde585e07a7063c9cc222b8cd9 |
| ENCFF564TPJ.tabix.bed.gz.dvc | 104.0 B | 0bdfed289be7580e350e4cca8dce0df6 |
| ENCFF564TPJ.tabix.bed.gz.tbi | 9.71 KB | b92435da1d3cce91dcf4827b77d727e5 |
| ENCFF564TPJ.tabix.bed.gz.tbi.dvc | 108.0 B | 93b21480f7ec9d96cf6f615f9eb06e6b |
| genomic_resource.yaml | 3.41 KB | acc5cad7821f80071b815f9b68c549ac |
| genomic_resource_original.yaml | 3.3 KB | a9b7bf21706d6774a7efd8ef7388171b |
| statistics/ |