Resource

Id Histone_ChIP-seq/ENCSR397TUHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR397TUH [biosample_summary="Homo sapiens GM23248" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR397TUH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005723/
  • biosample_summary: Homo sapiens GM23248
  • date_created: 2014-10-24T16:25:51.537442+00:00
  • date_released: 2016-11-04
  • doi: 10.17989/ENCSR397TUH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR397TUH float

Histone_ChIP-seq_ENCSR397TUH
Histone_ChIP-seq ENCSR397TUH [biosample_summary="Homo sapiens GM23248" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR397TUH [1.6, 26.7]
n
73,889,855
mean
6.59
sd
3.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 738898552.30% 77393
chr1 7110945 2.86% 7375
chr2 6162361 2.54% 6583
chr3 5039581 2.54% 5325
chr4 4346917 2.29% 4635
chr5 4129647 2.27% 4327
chr6 5453127 3.19% 5599
chr7 3861025 2.42% 4177
chr8 3536048 2.44% 3853
chr9 2831108 2.05% 2966
chr10 3306364 2.47% 3445
chr11 3352626 2.48% 3479
chr12 4058206 3.04% 4202
chr13 1961162 1.71% 2116
chr14 2206322 2.06% 2259
chr15 2304287 2.26% 2383
chr16 1854303 2.05% 1928
chr17 2945043 3.54% 3039
chr18 1815719 2.26% 1974
chr19 2482234 4.23% 2414
chr20 1619830 2.51% 1704
chr21 874010 1.87% 979
chr22 1042942 2.05% 1079
chrX 1537665 0.99% 1499
chrY 58383 0.10% 53
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 77393 226 13240 954.74 772
global segment-length histogram

Files

Filename Size md5
ENCFF117HZS.bed.gz 2.05 MB 7bf5c1fccf6263ad289562bc4f5f0f2d
ENCFF117HZS.tabix.bed.gz 869.37 KB 1d8c7ab20041a2578411dcbca2dcd7c9
ENCFF117HZS.tabix.bed.gz.tbi 326.48 KB 2eb36360108f88895edc9ddd5509c0f8
genomic_resource.yaml 1.59 KB fd44bcc62dbcf552d01d4813a66482f8
statistics/