Histone_ChIP-seq_ENCSR397HSO
Histone_ChIP-seq ENCSR397HSO [biosample_summary="Homo sapiens neural cell originated from H1" and target="H3K9me2"]
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| Id: | Histone_ChIP-seq/ENCSR397HSO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR397HSO [biosamplesummary="Homo sapiens neural cell originated from H1" and target="H3K9me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN981YIR|/analyses/ENCAN981YIR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF331MAR|/files/ENCFF331MAR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 23361361 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF478GTE|/files/ENCFF478GTE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF478GTE|/files/ENCFF478GTE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR397HSO | float |
Histone_ChIP-seq_ENCSR397HSO |
Histone_ChIP-seq ENCSR397HSO [biosample_summary="Homo sapiens neural cell originated from H1" and target="H3K9me2"]
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[1.75, 3.98] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF866CDK.bed.gz | 11.44 KB | 7916b64b920aed425708bf700a0e9e11 |
| ENCFF866CDK.bed.gz.dvc | 99.0 B | 88383069d00fdc29445751429b1b64a1 |
| ENCFF866CDK.tabix.bed.gz | 5.38 KB | d97c34f792fc27f725d43d19bf809c9a |
| ENCFF866CDK.tabix.bed.gz.dvc | 104.0 B | 340023a32341172a793de6cfbb19f55c |
| ENCFF866CDK.tabix.bed.gz.tbi | 9.07 KB | 9c47c4e71ab6d30c6a05451bdb7ac57b |
| ENCFF866CDK.tabix.bed.gz.tbi.dvc | 108.0 B | 84074e544432284b794beebca7e46cdc |
| genomic_resource.yaml | 3.32 KB | bf0541008c43d718948bd8cbdae34f07 |
| genomic_resource_original.yaml | 3.19 KB | 37dea145576c2cb79cf9f30bca700df9 |
| statistics/ |