Resource
| Id | Histone_ChIP-seq/ENCSR395YXN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR395YXN [biosample_summary="Homo sapiens T-cell male adult (37 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN303EEG|/analyses/ENCAN303EEG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF206QPZ|/files/ENCFF206QPZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR395YXN | float |
Histone_ChIP-seq_ENCSR395YXN |
Histone_ChIP-seq ENCSR395YXN [biosample_summary="Homo sapiens T-cell male adult (37 years)" and target="H3K4me3"]
|
 |
[1.92, 119] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34226245 | 1.06% | 28194 |
| chr1 | 3469842 | 1.39% | 2834 |
| chr2 | 2369935 | 0.98% | 1961 |
| chr3 | 1849674 | 0.93% | 1454 |
| chr4 | 1184033 | 0.62% | 960 |
| chr5 | 1556157 | 0.86% | 1178 |
| chr6 | 2085442 | 1.22% | 1623 |
| chr7 | 1570854 | 0.99% | 1395 |
| chr8 | 1164114 | 0.80% | 994 |
| chr9 | 1292033 | 0.93% | 1107 |
| chr10 | 1408187 | 1.05% | 1200 |
| chr11 | 1862396 | 1.38% | 1464 |
| chr12 | 1840156 | 1.38% | 1442 |
| chr13 | 727749 | 0.64% | 622 |
| chr14 | 1327749 | 1.24% | 1052 |
| chr15 | 1050071 | 1.03% | 867 |
| chr16 | 1372160 | 1.52% | 1202 |
| chr17 | 2078412 | 2.50% | 1742 |
| chr18 | 531662 | 0.66% | 457 |
| chr19 | 2216818 | 3.78% | 1855 |
| chr20 | 862845 | 1.34% | 731 |
| chr21 | 392904 | 0.84% | 363 |
| chr22 | 819923 | 1.61% | 720 |
| chrX | 1141693 | 0.73% | 935 |
| chrY | 51436 | 0.09% | 36 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 28194 | 190 | 19577 | 1213.95 | 936 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF156WFR.bed.gz | 767.96 KB | 443fcdcd642969a1feecb096c074d5bd |
| ENCFF156WFR.tabix.bed.gz | 323.58 KB | 3ee99b81252b9835ed2dcb3d04e11572 |
| ENCFF156WFR.tabix.bed.gz.tbi | 150.66 KB | c0ae65327399c0c8735b42e75ad2f190 |
| genomic_resource.yaml | 2.1 KB | ad0b09941986ad406b9c321ee30a68fc |
| statistics/ |