Histone_ChIP-seq_ENCSR394DRL
Histone_ChIP-seq ENCSR394DRL [biosample_summary="Homo sapiens psoas muscle tissue male child (3 years)" and target="H3K9me3"]
×
| Id: | Histone_ChIP-seq/ENCSR394DRL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR394DRL [biosamplesummary="Homo sapiens psoas muscle tissue male child (3 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male child (3 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN648ISC|/analyses/ENCAN648ISC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF085TDZ|/files/ENCFF085TDZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 37889988 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF515BMO|/files/ENCFF515BMO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF515BMO|/files/ENCFF515BMO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.13. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR394DRL | float |
Histone_ChIP-seq_ENCSR394DRL |
Histone_ChIP-seq ENCSR394DRL [biosample_summary="Homo sapiens psoas muscle tissue male child (3 years)" and target="H3K9me3"]
|
|
[1.74, 11.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF402CHB.bed.gz | 473.15 KB | 3a78e63e504c4669d783c88568b2bf86 |
| ENCFF402CHB.bed.gz.dvc | 100.0 B | c63710547cbae42294dfe0945d3f0ab2 |
| ENCFF402CHB.tabix.bed.gz | 246.82 KB | 7b2c4b42de77894fe6adc948978457e5 |
| ENCFF402CHB.tabix.bed.gz.dvc | 106.0 B | b56b2f4256d0ddbddf2a34c5b4ff3bf3 |
| ENCFF402CHB.tabix.bed.gz.tbi | 167.25 KB | d6c0e51ab6b541db40e9eefd10d3e205 |
| ENCFF402CHB.tabix.bed.gz.tbi.dvc | 110.0 B | 06ca17d2cccc470cb93d4cd047c9c797 |
| genomic_resource.yaml | 3.22 KB | ca06fb05226195beb2371511090d4b89 |
| genomic_resource_original.yaml | 3.09 KB | c7e39f4b7571a2d1016799c517564aaf |
| statistics/ |