Histone_ChIP-seq_ENCSR393HDC
Histone_ChIP-seq ENCSR393HDC [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR393HDC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR393HDC [biosamplesummary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (17 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN848YNB|/analyses/ENCAN848YNB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF838ILC|/files/ENCFF838ILC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF838ILC|/files/ENCFF838ILC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.91. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR393HDC | float |
Histone_ChIP-seq_ENCSR393HDC |
Histone_ChIP-seq ENCSR393HDC [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K9me3"]
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[1.83, 24.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF928XVT.bed.gz | 2.41 MB | fc25772b596981a7ccf9454b6c23a9a4 |
| ENCFF928XVT.bed.gz.dvc | 101.0 B | 6195dbf490f83b88dee0fc11d2298faa |
| ENCFF928XVT.tabix.bed.gz | 1.23 MB | 3fcb0b1a48f8dff2cb9ec92da78a2f6a |
| ENCFF928XVT.tabix.bed.gz.dvc | 107.0 B | 3e59ba3a8639eed806f23c667e697760 |
| ENCFF928XVT.tabix.bed.gz.tbi | 415.35 KB | 3f7fa18b41138d6236c19c3c7b6b27e1 |
| ENCFF928XVT.tabix.bed.gz.tbi.dvc | 110.0 B | 6e096f3cb07f0afd70a99131d5b8e2b3 |
| genomic_resource.yaml | 2.84 KB | e8845252ceba3614a7f78e4499294c3f |
| genomic_resource_original.yaml | 2.68 KB | 0ddd155bf0698fc96dd6c1de50a68a1e |
| statistics/ |