Resource

Id Histone_ChIP-seq/ENCSR391WDEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR391WDE [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR391WDE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000047/
  • biosample_summary: Homo sapiens neuronal stem cell originated from H1
  • date_created: 2015-10-01T07:17:32.816352+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR391WDE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR391WDE float

Histone_ChIP-seq_ENCSR391WDE
Histone_ChIP-seq ENCSR391WDE [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR391WDE [1.33, 17.6]
n
25,012,643
mean
3.81
sd
1.21

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 250126430.78% 87899
chr1 1616456 0.65% 5946
chr1_KI270708v1_random 544 0.43% 1
chr1_KI270709v1_random 1287 1.92% 3
chr1_KI270712v1_random 224 0.13% 1
chr1_KI270713v1_random 627 1.54% 3
chr2 1602484 0.66% 6150
chr2_KI270716v1_random 174 0.11% 1
chr3 1059951 0.53% 4179
chr4 1157122 0.61% 4420
chr4_GL000008v2_random 4486 2.14% 3
chr5 1272206 0.70% 4679
chr5_GL000208v1_random 725 0.78% 3
chr6 1062480 0.62% 4154
chr7 1597873 1.00% 5512
chr8 1469396 1.01% 4801
chr9 896481 0.65% 3257
chr9_KI270718v1_random 575 1.51% 1
chr9_KI270719v1_random 142 0.08% 1
chr9_KI270720v1_random 1236 3.17% 4
chr10 1224080 0.91% 4478
chr11 983620 0.73% 3694
chr12 1180225 0.89% 4024
chr13 738216 0.65% 2614
chr14 879974 0.82% 2974
chr14_GL000009v2_random 646 0.32% 4
chr14_GL000194v1_random 675 0.35% 3
chr14_GL000225v1_random 80960 38.34% 138
chr14_KI270722v1_random 11749 6.05% 35
chr14_KI270723v1_random 1011 2.65% 3
chr14_KI270724v1_random 921 2.33% 5
chr15 629513 0.62% 2250
chr16 946547 1.05% 3113
chr16_KI270728v1_random 3601 0.19% 10
chr17 740301 0.89% 2781
chr17_GL000205v2_random 47525 25.61% 59
chr17_KI270729v1_random 17253 6.14% 43
chr17_KI270730v1_random 11772 10.46% 31
chr18 522835 0.65% 1999
chr19 2855411 4.87% 8579
chr20 646554 1.00% 2355
chr21 454460 0.97% 1483
chr22 613513 1.21% 1867
chr22_KI270732v1_random 1127 2.71% 4
chr22_KI270733v1_random 465 0.26% 2
chr22_KI270735v1_random 3233 7.55% 9
chr22_KI270736v1_random 62096 34.13% 144
chr22_KI270738v1_random 914 0.92% 4
chrUn_GL000195v1 160 0.09% 1
chrUn_GL000214v1 790 0.57% 3
chrUn_GL000216v2 30015 17.00% 67
chrUn_GL000218v1 355 0.22% 2
chrUn_GL000219v1 12951 7.23% 25
chrUn_GL000224v1 7929 4.41% 25
chrUn_KI270429v1 162 11.90% 1
chrUn_KI270435v1 613 0.66% 3
chrUn_KI270438v1 10542 9.37% 28
chrUn_KI270442v1 64992 16.58% 118
chrUn_KI270448v1 335 4.19% 2
chrUn_KI270507v1 140 2.62% 1
chrUn_KI270508v1 132 6.77% 1
chrUn_KI270511v1 215 2.65% 1
chrUn_KI270512v1 1206 5.32% 2
chrUn_KI270516v1 460 35.38% 1
chrUn_KI270517v1 199 6.12% 1
chrUn_KI270519v1 2116 1.53% 4
chrUn_KI270538v1 1305 1.43% 7
chrUn_KI270589v1 2819 6.34% 4
chrUn_KI270591v1 720 12.42% 2
chrUn_KI270741v1 254 0.16% 1
chrUn_KI270742v1 353 0.19% 2
chrUn_KI270744v1 5107 3.03% 17
chrUn_KI270746v1 1329 2.00% 7
chrUn_KI270750v1 1220 0.82% 6
chrUn_KI270751v1 1827 1.21% 4
chrUn_KI270753v1 302 0.48% 1
chrUn_KI270754v1 341 0.85% 2
chrUn_KI270756v1 3105 3.90% 11
chrUn_KI270757v1 2426 3.40% 5
chrX 251091 0.16% 961
chrY 203466 0.36% 759
3286 contigs with no values (121003140 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87899 130 20431 284.56 224
global segment-length histogram

Files

Filename Size md5
ENCFF718CGL.bed.gz 1.7 MB 3cb6a0e9861e4a2a748dabd93a81ed50
ENCFF718CGL.tabix.bed.gz 862.88 KB a69ea0d06d454c5a54b76c8e6cfc3136
ENCFF718CGL.tabix.bed.gz.tbi 353.25 KB d4a2deb9c2b3ab7fa13a5715fb653846
genomic_resource.yaml 1.49 KB d6af9a6c63075cab814af8147acb8c93
statistics/