Histone_ChIP-seq_ENCSR389WWC
Histone_ChIP-seq ENCSR389WWC [biosample_summary="Homo sapiens OCI-LY7" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR389WWC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR389WWC [biosamplesummary="Homo sapiens OCI-LY7" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN838WBN|/analyses/ENCAN838WBN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN838WBN|/analyses/ENCAN838WBN/} has in progress subobject document {efd5304b-2022-41f0-a9ec-a7b20fda86c9|/documents/efd5304b-2022-41f0-a9ec-a7b20fda86c9/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF586OBE|/files/ENCFF586OBE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF586OBE|/files/ENCFF586OBE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.43. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR389WWC | float |
Histone_ChIP-seq_ENCSR389WWC |
Histone_ChIP-seq ENCSR389WWC [biosample_summary="Homo sapiens OCI-LY7" and target="H3K9me3"]
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[1.44, 8.54] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF429HZL.bed.gz | 800.28 KB | 76ad3dade9f0a7446f5e1b1b2d40d3aa |
| ENCFF429HZL.bed.gz.dvc | 100.0 B | b8f1ebddf63f66b4ee14b6b2649e427a |
| ENCFF429HZL.tabix.bed.gz | 374.72 KB | d4b685849a945b242eb8a726be9cbc38 |
| ENCFF429HZL.tabix.bed.gz.dvc | 106.0 B | cc8230719ab6b71e4fba007e1b4ed603 |
| ENCFF429HZL.tabix.bed.gz.tbi | 163.89 KB | 49a0f7a835b20ccfd171a9e62ce26b1e |
| ENCFF429HZL.tabix.bed.gz.tbi.dvc | 110.0 B | d744af85442ada146132a1c9b781afc9 |
| genomic_resource.yaml | 2.91 KB | 14e2cbea30e2a80b1f644699e87120a6 |
| genomic_resource_original.yaml | 2.8 KB | d452d3f8d8dd7d05eb8df0522064e71e |
| statistics/ |