Resource

Id Histone_ChIP-seq/ENCSR386KFOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR386KFO [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR386KFO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years)
  • date_created: 2021-04-30T04:18:06.006166+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR386KFO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (89 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR386KFO float

Histone_ChIP-seq_ENCSR386KFO
Histone_ChIP-seq ENCSR386KFO [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR386KFO [1.9, 60.5]
n
49,425,095
mean
25.1
sd
13.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 494250951.54% 28038
chr1 4821762 1.94% 2748
chr2 3416007 1.41% 1941
chr3 2887509 1.46% 1554
chr4 2034054 1.07% 1133
chr5 2479866 1.37% 1375
chr6 2878713 1.69% 1605
chr7 2390323 1.50% 1433
chr8 1966516 1.35% 1107
chr9 2021520 1.46% 1166
chr10 2128714 1.59% 1199
chr11 2660351 1.97% 1453
chr12 2631017 1.97% 1444
chr13 1134536 0.99% 656
chr14 1573507 1.47% 872
chr15 1546706 1.52% 881
chr16 1899861 2.10% 1128
chr17 2700353 3.24% 1505
chr18 929845 1.16% 533
chr19 3014731 5.14% 1804
chr20 1272789 1.98% 715
chr21 487523 1.04% 296
chr22 1091929 2.15% 632
chrX 1456963 0.93% 858
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28038 235 25126 1762.79 1494
global segment-length histogram

Files

Filename Size md5
ENCFF019ZWE.bed.gz 716.68 KB 7feaa324e0ca84fe52222894cdd67fa8
ENCFF019ZWE.tabix.bed.gz 318.56 KB 4fc8f854efd9536849be8e6175e054ef
ENCFF019ZWE.tabix.bed.gz.tbi 176.32 KB ea2c7d540822cc878f66bd3c9b14eeb8
genomic_resource.yaml 1.7 KB 5f663a1d2e646efc20c64250aeb03005
statistics/