Histone_ChIP-seq_ENCSR385YCN
Histone_ChIP-seq ENCSR385YCN [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR385YCN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR385YCN [biosamplesummary="Homo sapiens upper lobe of right lung tissue male adult (60 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN077CQM|/analyses/ENCAN077CQM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF822ITP|/files/ENCFF822ITP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF822ITP|/files/ENCFF822ITP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR385YCN | float |
Histone_ChIP-seq_ENCSR385YCN |
Histone_ChIP-seq ENCSR385YCN [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)" and target="H3K4me3"]
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[1.96, 62] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF917VSO.bed.gz | 737.29 KB | 5661cf29a96515c66256563ac855a1c0 |
| ENCFF917VSO.bed.gz.dvc | 100.0 B | bea9d9397e650c3d59b2dea83d5f07fd |
| ENCFF917VSO.tabix.bed.gz | 328.0 KB | 583a415f0ca5582fa9ee9f9b44257658 |
| ENCFF917VSO.tabix.bed.gz.dvc | 106.0 B | d86abb274a1a205ee2a89567d6749099 |
| ENCFF917VSO.tabix.bed.gz.tbi | 173.74 KB | 616477e801c5983b646384fc7632be9d |
| ENCFF917VSO.tabix.bed.gz.tbi.dvc | 110.0 B | 009082525fa2abad2516a5d177b4e111 |
| genomic_resource.yaml | 2.81 KB | 3aed209acd3e4190271326e268562941 |
| genomic_resource_original.yaml | 2.66 KB | 782c63ca94956e7389f6593841197ab1 |
| statistics/ |