Histone_ChIP-seq_ENCSR385NUC
Histone_ChIP-seq ENCSR385NUC [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR385NUC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR385NUC [biosamplesummary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (77 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN902NAO|/analyses/ENCAN902NAO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF206RZP|/files/ENCFF206RZP/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 34086440 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF206RZP|/files/ENCFF206RZP/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF206RZP|/files/ENCFF206RZP/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR385NUC | float |
Histone_ChIP-seq_ENCSR385NUC |
Histone_ChIP-seq ENCSR385NUC [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K4me1"]
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[1.77, 15.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF607YTO.bed.gz | 2.37 MB | a6f63e9684af3b98cb8bcce11f2e1682 |
| ENCFF607YTO.bed.gz.dvc | 101.0 B | 7ad9e71b63f9bfe08de579ebb139453f |
| ENCFF607YTO.tabix.bed.gz | 1.11 MB | 4e3bf37993ec8d5d826136990fcc4aa1 |
| ENCFF607YTO.tabix.bed.gz.dvc | 107.0 B | 0bbf1bfdfbebf239ff17f25a9b687bfb |
| ENCFF607YTO.tabix.bed.gz.tbi | 307.29 KB | dc4708a963326876bfd73b9615f51a22 |
| ENCFF607YTO.tabix.bed.gz.tbi.dvc | 110.0 B | 6f2600ff6a5b301fac2538bedda317f0 |
| genomic_resource.yaml | 3.33 KB | 1481acf10550ec91782f84f52034393a |
| genomic_resource_original.yaml | 3.18 KB | 5de263e46421399e63ca6aa5a4d59eac |
| statistics/ |