Histone_ChIP-seq_ENCSR383AEO
Histone_ChIP-seq ENCSR383AEO [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR383AEO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR383AEO [biosamplesummary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN724KYL|/analyses/ENCAN724KYL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF419VFV|/files/ENCFF419VFV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF419VFV|/files/ENCFF419VFV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR383AEO | float |
Histone_ChIP-seq_ENCSR383AEO |
Histone_ChIP-seq ENCSR383AEO [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K4me3"]
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[1.87, 58.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF451IGE.bed.gz | 945.11 KB | c3c753ef23afe553d8b036ef4ba581d6 |
| ENCFF451IGE.bed.gz.dvc | 100.0 B | 6518889cf1f2da0177e04572769bff83 |
| ENCFF451IGE.tabix.bed.gz | 432.42 KB | c653ed4a2f37569d57ea5a92bcc535dc |
| ENCFF451IGE.tabix.bed.gz.dvc | 106.0 B | 3d681c33bb26bf43f51d2758a9b0e870 |
| ENCFF451IGE.tabix.bed.gz.tbi | 211.98 KB | 091fe9669661bd302d8cb1021e3aac66 |
| ENCFF451IGE.tabix.bed.gz.tbi.dvc | 110.0 B | 8e1aa1bc44fdbca05696adfb58ce93ad |
| genomic_resource.yaml | 2.81 KB | 0dcb7a2688158caf0f4374e84641fdca |
| genomic_resource_original.yaml | 2.66 KB | fb5c22c230b667e16b125ee80ff9101b |
| statistics/ |