Histone_ChIP-seq_ENCSR381EFC
Histone_ChIP-seq ENCSR381EFC [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR381EFC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR381EFC [biosamplesummary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (77 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN110GBO|/analyses/ENCAN110GBO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF426OXR|/files/ENCFF426OXR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 28849397 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF426OXR|/files/ENCFF426OXR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF426OXR|/files/ENCFF426OXR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR381EFC | float |
Histone_ChIP-seq_ENCSR381EFC |
Histone_ChIP-seq ENCSR381EFC [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K27me3"]
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[1.9, 13.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF088FJL.bed.gz | 201.76 KB | bc8079c9c1eeed62657152f13a4ff3f2 |
| ENCFF088FJL.bed.gz.dvc | 100.0 B | f1197aa7bbe89fdd1daa34d06b0ba682 |
| ENCFF088FJL.tabix.bed.gz | 105.1 KB | b337dd1cb62940db70413bbe1ecdecd7 |
| ENCFF088FJL.tabix.bed.gz.dvc | 106.0 B | 1b65e14a5d14211c6647bd18027a0c1f |
| ENCFF088FJL.tabix.bed.gz.tbi | 54.57 KB | 0ab39164f599013a1bd78221a0d15be4 |
| ENCFF088FJL.tabix.bed.gz.tbi.dvc | 109.0 B | a30fc092823098535692804d1770c39b |
| genomic_resource.yaml | 3.31 KB | abae0484e32ae886d20f8cace66fe6d6 |
| genomic_resource_original.yaml | 3.16 KB | ca7b34d83ea3a3793611f4b71ad5dfeb |
| statistics/ |