Resource

Id Histone_ChIP-seq/ENCSR378HAMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR378HAM [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR378HAM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue male adult (50 years)
  • date_created: 2015-09-15T19:52:21.653154+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR378HAM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (50 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR378HAM float

Histone_ChIP-seq_ENCSR378HAM
Histone_ChIP-seq ENCSR378HAM [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR378HAM [1.72, 16.3]
n
24,803,030
mean
4.69
sd
1.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248030300.77% 41230
chr1 1681855 0.68% 2968
chr2 1818502 0.75% 3204
chr3 1405153 0.71% 2513
chr4 1487683 0.78% 2671
chr5 1774303 0.98% 2979
chr6 1243482 0.73% 2307
chr7 1432904 0.90% 2452
chr8 1351530 0.93% 2356
chr9 963777 0.70% 1587
chr10 1186064 0.89% 1978
chr11 1076887 0.80% 1868
chr12 1383437 1.04% 2218
chr13 609264 0.53% 1167
chr14 691225 0.65% 1274
chr15 638949 0.63% 1060
chr16 902674 1.00% 1363
chr17 546227 0.66% 864
chr18 510810 0.64% 897
chr19 2731745 4.66% 3047
chr20 454440 0.71% 774
chr21 332815 0.71% 567
chr22 254381 0.50% 447
chrX 232435 0.15% 504
chrY 92488 0.16% 165
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41230 205 32153 601.58 476
global segment-length histogram

Files

Filename Size md5
ENCFF234OMD.bed.gz 793.85 KB dfeda7492f85fa1a58d6d51933ac07d4
ENCFF234OMD.tabix.bed.gz 406.78 KB 357ef5ce2a3f286bb8de4b16754f5c7f
ENCFF234OMD.tabix.bed.gz.tbi 214.02 KB 06b7d4c6761aa89ff23ef4ef97884dd1
genomic_resource.yaml 1.48 KB d2503687d5ba4fafc1738392900752f3
statistics/