Histone_ChIP-seq_ENCSR377QMP
Histone_ChIP-seq ENCSR377QMP [biosample_summary="Homo sapiens GM23248" and target="H3F3A"]
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| Id: | Histone_ChIP-seq/ENCSR377QMP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR377QMP [biosamplesummary="Homo sapiens GM23248" and target="H3F3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN282IXK|/analyses/ENCAN282IXK/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF176WLX|/files/ENCFF176WLX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18996805 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF984PKN|/files/ENCFF984PKN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF984PKN|/files/ENCFF984PKN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR377QMP | float |
Histone_ChIP-seq_ENCSR377QMP |
Histone_ChIP-seq ENCSR377QMP [biosample_summary="Homo sapiens GM23248" and target="H3F3A"]
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[1.44, 9.17] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF921OQX.bed.gz | 3.46 MB | 9af97efbbfe462feed9d9d20d578c6e4 |
| ENCFF921OQX.bed.gz.dvc | 101.0 B | 135da7cd16feb3933c92c80c9b8de3c5 |
| ENCFF921OQX.tabix.bed.gz | 1.5 MB | df5605e8119cdcd856fc2a62f0aec620 |
| ENCFF921OQX.tabix.bed.gz.dvc | 107.0 B | 31c8ab681e4801c353f7c248a576385b |
| ENCFF921OQX.tabix.bed.gz.tbi | 333.47 KB | 6d33fbfa798620932e3c97b8a70af145 |
| ENCFF921OQX.tabix.bed.gz.tbi.dvc | 110.0 B | 8939ab28a63d6e92fc6d09422f657706 |
| genomic_resource.yaml | 3.16 KB | c34d97b58c030cd7dc4b1f43923da88a |
| genomic_resource_original.yaml | 3.05 KB | 37c3082a2087fea8ae4433e69a208a04 |
| statistics/ |