Resource
| Id | Histone_ChIP-seq/ENCSR377IMJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR377IMJ [biosample_summary="Homo sapiens BLaER1 36 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: 36 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR377IMJ | float |
Histone_ChIP-seq_ENCSR377IMJ |
Histone_ChIP-seq ENCSR377IMJ [biosample_summary="Homo sapiens BLaER1 36 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H4K20me1"]
|
 |
[1.18, 26.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 119640535 | 3.72% | 137792 |
| chr1 | 11197247 | 4.50% | 13048 |
| chr1_KI270706v1_random | 381 | 0.22% | 1 |
| chr1_KI270712v1_random | 407 | 0.23% | 1 |
| chr2 | 8486242 | 3.50% | 9949 |
| chr3 | 5964979 | 3.01% | 7389 |
| chr4 | 3809092 | 2.00% | 4667 |
| chr4_GL000008v2_random | 260 | 0.12% | 1 |
| chr5 | 5316595 | 2.93% | 6356 |
| chr6 | 4463286 | 2.61% | 5706 |
| chr7 | 6533984 | 4.10% | 7763 |
| chr8 | 6025416 | 4.15% | 6735 |
| chr9 | 5284916 | 3.82% | 6346 |
| chr9_KI270719v1_random | 524 | 0.30% | 2 |
| chr10 | 5878898 | 4.39% | 6805 |
| chr11 | 5736990 | 4.25% | 6581 |
| chr12 | 5673215 | 4.26% | 6553 |
| chr13 | 2156099 | 1.89% | 2619 |
| chr14 | 3575498 | 3.34% | 4385 |
| chr14_GL000009v2_random | 292 | 0.14% | 1 |
| chr14_GL000194v1_random | 4488 | 2.34% | 10 |
| chr15 | 3948153 | 3.87% | 4779 |
| chr16 | 6831507 | 7.56% | 6920 |
| chr17 | 7736307 | 9.29% | 8701 |
| chr17_GL000205v2_random | 342 | 0.18% | 1 |
| chr18 | 1669874 | 2.08% | 2328 |
| chr19 | 6834387 | 11.66% | 5822 |
| chr20 | 3929827 | 6.10% | 4238 |
| chr21 | 1567533 | 3.36% | 1679 |
| chr22 | 4406744 | 8.67% | 4528 |
| chr22_KI270731v1_random | 547 | 0.36% | 1 |
| chrUn_GL000195v1 | 524 | 0.29% | 2 |
| chrUn_GL000214v1 | 447 | 0.32% | 1 |
| chrUn_GL000219v1 | 2830 | 1.58% | 5 |
| chrUn_GL000224v1 | 301 | 0.17% | 1 |
| chrUn_KI270751v1 | 305 | 0.20% | 1 |
| chrX | 2601621 | 1.67% | 3866 |
| chrY | 477 | <0.01% | 1 |
| 3329 contigs with no values (126779663 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 137792 | 250 | 102219 | 868.27 | 437 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF684XSA.bed.gz | 2.66 MB | c5565f811d7414face1d0be59240c0e4 |
| ENCFF684XSA.tabix.bed.gz | 1.31 MB | 569f812eb7221b41d4f5266d92225545 |
| ENCFF684XSA.tabix.bed.gz.tbi | 195.73 KB | 402c64c378729811f8ea6fd126ae1a39 |
| genomic_resource.yaml | 3.12 KB | 5acb5d01905bd0b72e4094b914489f50 |
| statistics/ |