Resource

Id Histone_ChIP-seq/ENCSR376JOCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR376JOC [biosample_summary="Homo sapiens testis tissue male adult (37 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR376JOC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000473/
  • biosample_summary: Homo sapiens testis tissue male adult (37 years)
  • date_created: 2017-07-28T10:07:22.774024+00:00
  • date_released: 2017-08-28
  • doi: 10.17989/ENCSR376JOC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR376JOC float

Histone_ChIP-seq_ENCSR376JOC
Histone_ChIP-seq ENCSR376JOC [biosample_summary="Homo sapiens testis tissue male adult (37 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR376JOC [1.6, 3.92]
n
289,082
mean
2.46
sd
0.386

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2890820.01% 609
chr1 8507 <0.01% 21
chr1_KI270709v1_random 1668 2.49% 3
chr2 11724 <0.01% 29
chr3 11908 0.01% 29
chr4 17990 0.01% 41
chr4_GL000008v2_random 4159 1.98% 1
chr5 12049 0.01% 30
chr5_GL000208v1_random 328 0.35% 1
chr6 10614 0.01% 26
chr7 12896 0.01% 31
chr8 13522 0.01% 35
chr9 5098 <0.01% 12
chr9_KI270719v1_random 514 0.29% 1
chr10 23346 0.02% 43
chr11 11529 0.01% 28
chr12 12325 0.01% 29
chr13 1500 <0.01% 4
chr14 4363 <0.01% 11
chr14_GL000225v1_random 3425 1.62% 7
chr15 2102 <0.01% 5
chr16 6060 0.01% 13
chr17 3261 <0.01% 7
chr17_GL000205v2_random 1333 0.72% 2
chr17_KI270729v1_random 1742 0.62% 4
chr18 2351 <0.01% 5
chr19 29202 0.05% 60
chr20 12548 0.02% 22
chr21 21665 0.05% 37
chr22 7218 0.01% 13
chr22_KI270732v1_random 833 2.01% 1
chr22_KI270735v1_random 1715 4.01% 3
chr22_KI270736v1_random 3759 2.07% 8
chrUn_GL000219v1 1095 0.61% 2
chrUn_GL000224v1 3020 1.68% 7
chrUn_KI270438v1 2602 2.31% 4
chrUn_KI270442v1 8398 2.14% 14
chrUn_KI270448v1 377 4.72% 1
chrUn_KI270516v1 535 41.15% 1
chrUn_KI270517v1 310 9.53% 1
chrUn_KI270519v1 296 0.21% 1
chrUn_KI270538v1 524 0.57% 1
chrUn_KI270589v1 525 1.18% 1
chrUn_KI270590v1 770 16.44% 1
chrUn_KI270751v1 1260 0.84% 1
chrUn_KI270756v1 410 0.52% 1
chrUn_KI270757v1 381 0.53% 1
chrX 469 <0.01% 1
chrY 6856 0.01% 9
3318 contigs with no values (126130926 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 609 280 4159 474.68 410
global segment-length histogram

Files

Filename Size md5
ENCFF704HOY.bed.gz 12.96 KB b2a74b07e7ab13d06ae90f5992019459
ENCFF704HOY.tabix.bed.gz 6.7 KB 25df5c729d8dee9b290f2e05b2a771c2
ENCFF704HOY.tabix.bed.gz.tbi 10.47 KB f9cf89a68c98e5b021f574992655dd1f
genomic_resource.yaml 1.48 KB 4125030e85d284548172f40229f6c0f4
statistics/